Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21369 98.7 9e-16 >seq21369 Length=4562 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || ||||| || ||| | || ||||| || | Sbjct 728 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 787 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | ||| | || || || ||| || || |||||| | || || ||||| Sbjct 788 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 847 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || |||||||| || ||||||||||| ||||||| | | | ||| | ||| ||||| Sbjct 848 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGA-TGGACGAACTCTTTCCGACTATAA 906 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || |||||||| || || Sbjct 907 TATACAGAAGGAATCAACACTTCATCTTGTCCT 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445420591143120