Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1181 230 3e-55 seq2578 102 1e-16 >seq1181 Length=30581 Score = 230 bits (254), Expect = 3e-55 Identities = 608/926 (66%), Gaps = 43/926 (5%) Strand=Plus/Minus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 33353 CATGAAATCAAACGGATTGGTA---------------------AC-ATT----GTAAAtt 33386 ||| |||||||| |||||| | || ||| | ||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 33387 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATG 33438 | ||| | | || | |||| | | || ||||||| ||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 33439 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATT 33498 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 33499 CTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACG-GTTTCTTCACTCGGTGGA 33557 | ||||| || ||||| | | |||| || | ||| ||| ||| | | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 9985 Query 33558 TGTAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33616 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 9984 TG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACT 9927 Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 |||||||| || ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 9926 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 9867 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 | ||||| || ||||| |||| ||||| ||||| ||||| ||||| | | || Sbjct 9866 AGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 9807 Query 33737 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 | || || | || || | ||||| | | ||||| | ||||| ||| || Sbjct 9806 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 9747 Query 33794 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33852 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 9746 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 9688 Query 33853 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33912 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 9687 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 9628 Query 33913 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTT 33972 | || || || | | |||| | ||||| ||||| | || |||||| | || | Sbjct 9627 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTTCT 9568 Query 33973 CATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 34032 | || ||||| ||||| || ||||| || || || || | ||| |||| || Sbjct 9567 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 9508 Query 34033 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 34092 | | | || | ||||| ||| |||||| || | |||||| |||||||| | Sbjct 9507 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 9448 Query 34093 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 34152 ||||||| || || | ||||| ||||| | || ||||| || ||||||| || |||| Sbjct 9447 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGA 9388 Query 34153 AAATAACAAATCTATTTGGATTTGGT 34178 ||| || || | | ||| |||||| Sbjct 9387 AAAGGACGAAACGGTGTGGGTTTGGT 9362 >seq2578 Length=22660 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || ||||| || ||||||| || | ||| ||| ||| | ||| || || |||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 63606 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 ||||| ||||| || |||| | | |||||||| || || | || | | |||| Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 11154 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || || ||||| | || || ||||| || ||||||||||||||||| | || || ||| Sbjct 11153 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTATAC 11094 Query 63726 GTCT 63729 |||| Sbjct 11093 GTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629329011124080