Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1181 214 2e-50 seq2578 104 2e-17 >seq1181 Length=30581 Score = 214 bits (236), Expect = 2e-50 Identities = 599/916 (65%), Gaps = 55/916 (6%) Strand=Plus/Minus Query 11341 TTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTC 11400 ||||||||||| |||||| || ||||| || ||||| ||||| | |||||||| || Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 11401 CATAAAGCTAAAAGGATTAT-------ATACA----------------TTGAAGA----- 11432 |||||| ||||||||| | ||||| | ||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 11433 ------CTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 | |||||| |||| | || || || || ||||||| ||||| || |||| Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 11487 GAGACATTAAACAACAATTCATACCTAT-AAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || |||| | |||||||| || || ||| | || || | ||| ||| |||||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTG-ACTGGTAGAGCTTCTGATAAAAAC 10046 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605 |||| |||||| |||||| || | ||||| ||| | | |||||| || || Sbjct 10045 TCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 11606 TGTAATAA-ATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACT 11664 | | |||| ||||||||| | || ||| || ||||||||||||| |||||||||||||| Sbjct 9985 T-TGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACT 9927 Query 11665 TATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATAT 11724 |||| |||||| ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 9926 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 9867 Query 11725 AGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTC 11784 ||| || || ||||||||| || | || ||||| |||||||| || | || | ||| Sbjct 9866 AGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 9807 Query 11785 TCCA----TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 | || || | | | || | ||||| | | ||||| | ||| || ||| | Sbjct 9806 TGCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 11841 CGCA--TTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || || ||| | ||| ||||| || | | ||||| | ||| | | Sbjct 9747 CACAAGTTAAGTTGCT--TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 |||||||| ||||||||| |||||||| || |||||||| || |||||||| || | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| || || || |||||| ||| || ||| || | ||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||| |||||| || ||||| | ||||| || |||| | | ||| || | Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 12079 TTC----GTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134 ||| ||| || | ||||||| | |||||| || ||||| || |||| Sbjct 9509 TTCCCCAACCTTGAGCGA----CTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTT 9454 Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194 | || ||||||||| || || | | ||||| | | ||||| ||| ||||| | | Sbjct 9453 CCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTA 9394 Query 12195 TAGGGAAAATAACGAA 12210 | ||||||| ||||| Sbjct 9393 TGGGGAAAAGGACGAA 9378 >seq2578 Length=22660 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 ||| || || || |||| ||| ||||| | || |||| ||| | |||||| | || || Sbjct 11274 TCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCC 11215 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||||||||| || || || || | | | ||||||||| || | || || ||||| Sbjct 11214 TTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGT 11155 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 ||| |||||||| | ||| || || |||||| | ||||||||||| |||| Sbjct 11154 TCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 11105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468161336029840