Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1181 228 1e-54 seq2578 105 9e-18 >seq1181 Length=30581 Score = 228 bits (252), Expect = 1e-54 Identities = 597/905 (66%), Gaps = 47/905 (5%) Strand=Plus/Minus Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928 ||| |||||||| || || || || ||||| || || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 35929 CATGAAATCGAATGGATTG---------------------ATAAC-ATTATAA----Att 35962 ||| ||||| || |||||| | ||| |||| || ||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 35963 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 36014 | ||| | | || | |||| | | || ||||||| |||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 36015 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 36074 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 36075 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATATTACT-GTTTCTTCACTCGGTGG 36132 | ||||| || ||| ||||| ||| |||| || || || ||| ||| | | Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 36133 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 36191 | |||| ||||||||| | | ||| |||||||| || ||||| || |||||||||| Sbjct 9985 TTG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 36192 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 36251 | |||||||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 36252 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 36311 | | || || |||||||| || | ||||| ||||| ||||| ||||| | | | Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 36312 CTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 36368 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 36369 CACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 36426 |||||| | ||| || ||| || || |||||| ||| |||| || ||||| | Sbjct 9747 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 36427 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 36486 ||||||||||| || | | |||||||| || ||||| || || || || || || | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 36487 TCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 36546 || || || || | | |||| | ||||| ||||| | || |||||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 36547 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 36606 || || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 36607 TTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 36666 ||| | || | ||||| ||| |||||| || | |||||| |||||||| Sbjct 9509 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 36667 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 36726 |||||||| || || | ||||| ||||| | || ||||| || ||||||| || || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 36727 AAAAA 36731 |||| Sbjct 9389 GAAAA 9385 >seq2578 Length=22660 Score = 105 bits (116), Expect = 9e-18 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || ||||| || ||||||| || | ||| ||| ||| | |||||| || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 66456 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 11156 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 66517 ACGTCT 66522 |||||| Sbjct 11095 ACGTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657662214223240