Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1181 89.7 5e-13 >seq1181 Length=30581 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 ||||||| | | |||||||| | ||||| | | | |||| | |||||||| |||||| Sbjct 9753 AAAAAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATCTACTTTTGCAGAACGT 9812 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATT- 52682 | | || ||||| |||||||||||| |||||||| ||||| || || || ||||| Sbjct 9813 TTAATTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTCGCAGCTATATTC 9872 Query 52683 TTACATCAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | | | || | || | | ||||| || || | |||||||| || || || | Sbjct 9873 TGGCTTAAGAAACGAGGTC-TTATGCCTGGACTGTCTTTTAGCAATGAATTAATCAGTAG 9931 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGT 52773 ||||||||| | || ||||| || ||| Sbjct 9932 AGACGAAGGACTACATTGTGATTTCGCCTGT 9962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495679172151200