Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1181 235 8e-57 seq2578 105 1e-17 >seq1181 Length=30581 Score = 235 bits (260), Expect = 8e-57 Identities = 607/926 (66%), Gaps = 43/926 (5%) Strand=Plus/Minus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 49731 CATGAAATCAAACGGATTGGTAACATTATA--------------------------AAtt 49764 ||| |||||||| |||||| | || ||| |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 49765 t--------ttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATG 49816 | ||| | | || | |||| | | || || |||| |||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 49817 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 49876 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 49877 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACG-GTTTCTTCACTCGGTGGA 49935 | ||||| || ||||| ||| |||| || || ||| ||| ||| | | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 9985 Query 49936 TGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 49994 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 9984 TG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACT 9927 Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 9926 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 9867 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 | || || |||||||| |||| ||||| ||||| ||||| |||| | | || Sbjct 9866 AGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 9807 Query 50115 TCCATAACTGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 50171 | || || | | || || | ||||| | | ||||| | ||||| ||| || Sbjct 9806 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 9747 Query 50172 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 50230 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 9746 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 9688 Query 50231 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 50290 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 9687 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 9628 Query 50291 CGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTT 50350 | || || || | | |||| | ||||| ||||| | || ||||| | || | Sbjct 9627 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTTCT 9568 Query 50351 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTT 50410 | || ||||||||||| || ||||| || || || || | ||| ||||| || Sbjct 9567 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 9508 Query 50411 CGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 50470 | | || | ||||| ||| |||||| || | ||| || |||||||| | Sbjct 9507 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 9448 Query 50471 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGA 50530 ||||||| || || | ||||| ||||| | || ||||| || ||||||| || |||| Sbjct 9447 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGA 9388 Query 50531 AAATAACAAATCTATTTGGATTTGGT 50556 ||| || || | | ||| |||||| Sbjct 9387 AAAGGACGAAACGGTGTGGGTTTGGT 9362 >seq2578 Length=22660 Score = 105 bits (116), Expect = 1e-17 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || ||||| || ||||||| || | ||| ||| ||| | |||||| || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 80335 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 11156 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 80395 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 80396 ACGTCT 80401 |||||| Sbjct 11095 ACGTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717711594000040