Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1181 214 2e-50 >seq1181 Length=30581 Score = 214 bits (236), Expect = 2e-50 Identities = 452/673 (67%), Gaps = 46/673 (7%) Strand=Plus/Minus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||||||||| ||||| || ||||| ||||| || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 13643 CATAAAATCAAATGGATTT--------ATTGACATAAAC--------------------- 13673 |||||||||||| ||||| || || ||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 13674 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATT 13728 || || ||| |||| ||||| | ||||| || || || ||||| ||||| || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 13729 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 13788 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 13789 CTTTTTCTAT-AGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGA 13847 | | |||||| ||| || |||||| |||| || || | || || ||||| Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 13848 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13907 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 9985 TTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACTG 9926 Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 9925 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 9866 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 || || || || ||||| || | || || ||||| ||||| || ||||| |||||| Sbjct 9865 GCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 9806 Query 14028 CCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14086 |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 9805 GCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 9747 Query 14087 AAAA--TCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAA 14142 | || | ||| || || || || || | | | ||| | ||||| ||| ||| | Sbjct 9746 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG--A 9691 Query 14143 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAA 14202 ||||||||||||| | ||| |||||||||||||| || || || ||||||||||| | Sbjct 9690 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 9631 Query 14203 AACCATAAAAGCA 14215 ||||||||||| Sbjct 9630 TCCCATAAAAGCA 9618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479355845007400