Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1181 224 9e-54 >seq1181 Length=30581 Score = 224 bits (248), Expect = 9e-54 Identities = 574/871 (66%), Gaps = 46/871 (5%) Strand=Plus/Minus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||||||||| ||||| || ||||||||||| || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 13431 CATAAAATCGAATGGATT-------TGTTG-ACATAAAC--------------------- 13461 ||||||||| || ||||| || | || ||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 13462 -----ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATT 13516 || || ||| |||| ||||| | || || || || || ||||| ||||| || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 13517 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATT 13576 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 13577 CTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGA 13635 | | |||||| ||| || ||||| |||| || || || | || || ||||| Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 13636 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 13695 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 9985 TTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACTG 9926 Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 9925 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 9866 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 || ||||| || ||||| || | || || ||||| ||||| || |||| |||||| Sbjct 9865 GCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 9806 Query 13816 CCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 13875 |||| | | ||| | | ||||| | | ||||| | || |||||| || | Sbjct 9805 GCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAACA 9746 Query 13876 AAA--TCCATTGTTTCGATTGCATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAAA 13930 || | ||| || || || ||||| | || || |||| ||||| ||| ||| | Sbjct 9745 CAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG--A 9691 Query 13931 TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAA 13990 ||||||||||||| | ||| |||||||||||||| || || || ||||||||||| | Sbjct 9690 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 9631 Query 13991 AACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGT 14050 |||||||| || | | | |||| || || ||| | || | |||| | || Sbjct 9630 TCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGT 9571 Query 14051 TTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATT 14110 | || ||||| || ||||| || ||||| || || || | || || || | Sbjct 9570 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 9511 Query 14111 GCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAA 14170 | || || ||||| | ||||| | ||| || || | ||| || || || | Sbjct 9510 GTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 9451 Query 14171 CTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 | ||||||||| ||| ||||| || ||||| Sbjct 9450 CAGTCCAAAAAGAAGCTACAGCCTTCTTATA 9420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478217528756040