Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1181 246 4e-60 seq2578 109 7e-19 >seq1181 Length=30581 Score = 246 bits (272), Expect = 4e-60 Identities = 614/928 (66%), Gaps = 47/928 (5%) Strand=Plus/Minus Query 41776 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTC 41835 ||| |||||||| || || || || ||||| || ||||||||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 41836 CATGAAATCAAACGGATTGGTAACATTATA--------------------------AAtt 41869 ||| |||||||| |||||| | || ||| |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 41870 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATG 41921 | ||| | | || | |||| | | || |||||||| ||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 41922 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 41981 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 41982 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 42039 | ||||| || ||| ||||| ||| |||| || || || ||| ||| | | Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 42040 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTAC 42098 | |||| ||||||||| | | ||| |||||||| || || || || || ||||||| Sbjct 9985 TTG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 42099 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 42158 | |||||||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 42159 TAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 42218 ||| || || |||||||| |||| ||||| ||||| ||||| ||||| | | | Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 42219 CTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 42275 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 42276 CACAAGGCATCGTTTCT-ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACA 42334 |||||| | ||| || ||||| || |||||| ||| |||| || ||||| | Sbjct 9747 CACAAGTTAA-GTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATG 9689 Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 |||||||| || || | | |||||||| || ||||| || || || || ||||| | Sbjct 9688 TATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATC 9629 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || || || || | |||| | | ||| ||||| | || ||||| | || Sbjct 9628 CCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTTC 9569 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 ||| || ||||||||||| || ||||| || || || || | ||| |||| | Sbjct 9568 TCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGT 9509 Query 42515 TCGTCCGGTGTTAATTTA-TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTAC 42573 || || || | | | ||||| ||| |||||| || | ||| || ||||| || Sbjct 9508 TC-CCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 42574 CGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGG 42633 |||||||| || ||| | ||||| ||||| | || ||||| ||| ||||||| || || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 42634 GAAAATAACAAATCTATTTGGATTTGGT 42661 ||||| || || | | ||| |||||| Sbjct 9389 GAAAAGGACGAAACGGTGTGGGTTTGGT 9362 >seq2578 Length=22660 Score = 109 bits (120), Expect = 7e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || ||||| || ||||||| || | ||| ||| ||| | |||||| || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 72418 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 11156 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGT 72478 |||| || ||||| | || || ||||| || ||||||||||||||||||| || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 72479 ACGTCT 72484 |||||| Sbjct 11095 ACGTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670618555376360