Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq21369 84.2 2e-11 >seq21369 Length=4562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||| ||||| || ||||| || || ||| Sbjct 954 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 895 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| |||||||| |||||| | || |||||||| || || || || Sbjct 894 AGAGTTCGTCCA-TCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGG 836 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTA 143135 ||||||||||| || | | |||| | ||| ||| ||| | || || | || || | Sbjct 835 GATGCCTTCTTTATC-TTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 777 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | || | || || || || | ||| || || || || ||||| Sbjct 776 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506621077241520