Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2578 105 1e-17 seq7541 84.2 3e-11 >seq2578 Length=22660 Score = 105 bits (116), Expect = 1e-17 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 96851 CAAT-GCAATGTCACGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCG 96909 |||| ||| || ||||||| ||| || || || || || || ||||| ||| | ||| Sbjct 11465 CAATAGCACTG-CACGATATGTTGACCAAGGAGGTAACAAGCGTCCAGGAGCTTTTGCCA 11523 Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 | ||||| |||||||||||| | || || ||| | || || || ||||| ||||| ||| Sbjct 11524 TGTACTTAGAACCTTGGCACCCTGATGTATTTCAGTTCATAGAAATGCGAAAAAATACTG 11583 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || |||||| || || |||||||||| | ||| |||||| | || || ||||| | Sbjct 11584 GCGCCGAAGAGATTCGTGCACGGGACTTGTTCTTTGCCCTCTGGATACCTGACTTGTTTA 11643 Query 97030 TGAAGCGCGT 97039 || ||||| Sbjct 11644 TGCGCCGCGT 11653 >seq7541 Length=12614 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 70339 GGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||| || |||||||| || || |||||||| ||| || | || || | ||||||||||| Sbjct 9685 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 9744 Query 70399 CATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTT 70458 ||||| || | ||| | |||||||| ||||| |||||||| || || | |||| Sbjct 9745 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTC 9804 Query 70459 AAATCA 70464 ||| || Sbjct 9805 AAACCA 9810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740484314062360