Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq21369 95.1 8e-15 >seq21369 Length=4562 Score = 95.1 bits (104), Expect = 8e-15 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||| || || || |||||||| || || || | | | || || |||| ||| Sbjct 931 ATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTG 872 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAAT--- 33282 || ||| ||| |||| |||||| ||||| | || ||||||||||| || ||| Sbjct 871 TTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTT 812 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||||| | |||| || || || || || | ||| || || ||||| |||||||| Sbjct 811 CGCCT---TAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCC 755 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || || || ||||| ||||| Sbjct 754 CGTAAGTGTCTTCACAAAAATCTGCAT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318536486684778