Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1181 264 1e-65 >seq1181 Length=30581 Score = 264 bits (292), Expect = 1e-65 Identities = 605/906 (67%), Gaps = 50/906 (6%) Strand=Plus/Minus Query 12862 TTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTC 12921 ||||||||| | ||||| || |||||||||||||| |||||||| | || |||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 12922 CATAAAATCGAAAGGATTTTTCGAACAATAGT-------------------------ATT 12956 ||||||||| |||||||| | ||| ||| ||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 12957 T---------TTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACT 13007 | || | | || | ||| | || | ||||| || | ||| || ||||||| Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 13008 GTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt 13067 | ||| | | || |||||||| ||||| | || || | |||||||| |||||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 13068 ttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGA- 13126 | |||||| ||| || || | | ||| | || | |||||| || |||| | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTC-CT--TGGAAGGC 9989 Query 13127 --TTTGATAG-ATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTA 13183 ||||||| ||| ||||| | | ||| || |||||||| || | |||||| |||||| Sbjct 9988 TTTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTA 9929 Query 13184 CTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAAT 13243 || |||| || || ||| | || || |||||||| |||||||| |||| ||| ||| Sbjct 9928 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 9869 Query 13244 ATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTT 13303 ||||| || || ||| |||||||| | ||||| ||||||||||| || || || | | Sbjct 9868 ATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGT 9809 Query 13304 TCACCATACGTACTATTTTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTT 13362 || || | ||| |||| | ||| | ||||| | | ||||| | || |||| | Sbjct 9808 TCTGCAAAAGTA-GATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 9750 Query 13363 AACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAAT 13422 ||| || | | || ||| ||||| || | | | | |||| || |||| || Sbjct 9749 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 13423 ATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAA 13482 || ||||| || ||||| |||||||| || |||||||| || || ||||| || | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 13483 ACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTT 13542 |||||||| || | | |||||| | ||| ||||| | || | |||| | ||| Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 13543 TTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGT-GCTTAATAAAttttt 13601 ||| || || |||||||| || ||||| ||||| | | || | || |||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 13602 tttCGTTTTC-TGA-CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTC 13659 || | | ||| | ||| ||||| | | |||||| || ||||| ||||| || Sbjct 9509 TTCCCCAACCTTGAGCGACT---CCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 9453 Query 13660 AACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAAT 13719 || |||||||||||||| |||||||||||||| | ||| | ||| | ||| | || Sbjct 9452 CACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTAT 9393 Query 13720 GGGAAA 13725 ||| || Sbjct 9392 GGGGAA 9387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430656418515522