Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq17479 91.5 2e-13 seq7541 89.7 6e-13 seq30251 82.4 9e-11 >seq17479 Length=5980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/243 (70%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 164536 GGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAA--GCTTTTAAAT 164593 || || |||||| ||||||||| ||||||| ||| |||| | || |||| ||| Sbjct 1302 GGTCCACCTGGTACTGGTAAAACACTAATGGCACGACAAATTGGTAAAATGCTT---AAT 1358 Query 164594 ---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGT 164650 || || || ||||||||| |||||||| |||| | |||||||| ||||| | Sbjct 1359 GCACGTGAACC--TAAAATTGTCAATGGTCCAAGTATATTAGATAAATATGTCGGTGAAT 1416 Query 164651 CAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCA--GG 164708 | ||||| ||| | | || || || || |||||||||||| ||| || ||| || Sbjct 1417 CTGAAGCGAATATCCGTAAATTATTCGCTGATGCTGAAGAAGAAGAAA--AACGCATGGG 1474 Query 164709 TTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG 164768 | | | ||| ||| ||||| | |||||||| || ||||| |||| ||| ||| Sbjct 1475 TGCAAAATCTGCATTGCATATTATTATATTTGATGAAATTGATGCCATTTGTAAATCACG 1534 Query 164769 TGG 164771 ||| Sbjct 1535 TGG 1537 >seq7541 Length=12614 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/159 (74%), Gaps = 10/159 (6%) Strand=Plus/Minus Query 7225 TCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTT---GATCCATAA 7281 |||||||||||||| | | ||||||||| || || |||| ||| ||||||| Sbjct 4106 TCACCTTCTTCACGCTCAGTAAATCCTAGTCCATCTAAAA---ATTCACGAGATCCATTT 4050 Query 7282 GCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATCCTTTAA 7339 |||||||| | ||||||| || |||| | || | |||||||||||| || || Sbjct 4049 GCATCCCAGAAATGTACA--TTCTTTTCCGCCAGTTCACGAGAATTTGTAGACCCACGAA 3992 Query 7340 GGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACA 7378 |||||||| ||||||||||| ||||| || |||||| Sbjct 3991 TAAACCATAATAGTTCTTCTACGATTCCGCGAAAAAACA 3953 >seq30251 Length=2492 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 || ||||| || ||||| || ||||||||||||||||||||| || || || || Sbjct 528 CAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATGTGAAGGA 469 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || || ||| |||||||||| ||||| ||| |||| ||||| ||||| Sbjct 468 ATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGAC 419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595409744847600