Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8281 167 4e-37 seq35574 163 4e-36 seq40718 159 5e-35 seq39992 147 3e-31 >seq8281 Length=11798 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 287 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 229 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| || || || || | || |||||| |||| || |||| Sbjct 228 CCGTCGTCTGGCTCGTCGTGGCGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 169 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 168 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 109 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 108 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 49 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 48 TCGTACTTTGTACGGTTTCGGTGGTTAAT 20 >seq35574 Length=1764 Score = 163 bits (180), Expect = 4e-36 Identities = 199/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 868 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 810 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| || || || || | || |||||| |||| || |||| Sbjct 809 CCGTCGTCTGGCTCGTCGTGGCGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 750 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 749 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 690 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 689 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 630 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || || || || |||||| Sbjct 629 TCGTACTTTGTACGGGTTCGGTGGTTAAT 601 >seq40718 Length=1287 Score = 159 bits (176), Expect = 5e-35 Identities = 184/245 (75%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || || |||||||| || ||||| ||||| || || Sbjct 1034 GCCAAGAGACATCGCA-AGGTGTTGCGTGACAACATCCAGGGTATCACAAAGCCTGCAAT 1092 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||||||||| || || || || | || |||||| |||| || |||| Sbjct 1093 CCGTCGTCTGGCTCGTCGTGGCGGTGTGAAACGCATTTCAGGATTGATCTACGAGGAGAC 1152 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| |||| | || || ||| ||| |||| |||||| || ||| || || Sbjct 1153 TCGTGGTGTTCTGAAAGTGTTTCTGGAGAACGTGATCCGTGATGCAGTCACCTACACAGA 1212 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || | ||||| | || || || |||||||| ||||| Sbjct 1213 GCACGCCAAGAGGAAGACAGTGACAGCTATGGACGTGGTGTACGCTTTGAAACGCCAAGG 1272 Query 16672 CCGTA 16676 |||| Sbjct 1273 TCGTA 1277 >seq39992 Length=1347 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || || || ||||| ||||| || ||||| ||||| Sbjct 987 CTGCGTGATAACATCCAAGGTATTACGAAACCTGCTATTCGTCGCCTTGCTCGCCGTGGA 928 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | ||||| ||| |||| || || | ||||| ||| || || | || Sbjct 927 GGTGTAAAACGCATTTCTGGTTTGATCTACGAGGAAACTCGTGGTGTGTTAAAAGTATTT 868 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | ||||| | ||| ||| || || || ||||| || || || |||||||| Sbjct 867 CTGGAAAATGTTATTCGTGACGCTGTCACGTACACGGAGCATGCCAAGCGGAAGACTGTA 808 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | || ||||| |||||||| || || |||| | || |||||||| Sbjct 807 ACCGCCATGGACGTAGTGTATGCTTTGAAACGCCAGGGTCGTACATTGTACGGTTTTGGT 748 Query 16694 AGTTAA 16699 ||||| Sbjct 747 GGTTAA 742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79018457193273