Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1181 138 1e-27 >seq1181 Length=30581 Score = 138 bits (152), Expect = 1e-27 Identities = 575/908 (63%), Gaps = 54/908 (6%) Strand=Plus/Minus Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 |||||| |||| ||||| || || ||||| |||||||||||||| | ||||||| ||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 21247 CATAAAATCAAATGGATTTTCAGATTTA--------------------------AATATT 21280 |||||||||||| ||||| ||||| | | || ||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 21281 T--------TATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332 | | | | |||| ||||| || || || ||||| | |||||| || || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 21333 GACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAG 21392 ||||||| | || |||||||| || || || | || || ||||||| || ||||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 21393 ATTTTTCTAT-AGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGG--G 21449 | |||||| ||| || || || ||||| | | | | | || | || | Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTAT-----TGACTCAACACGTTCCTTGGAAG 9991 Query 21450 GATACA--ATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCC 21506 | | ||||| |||||||| | | ||| || ||||||||||| | ||||| || | Sbjct 9990 GCTTTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTC 9931 Query 21507 TACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAA 21566 |||| ||||||||||| ||| | | || ||||| | |||| || || | ||| | Sbjct 9930 TACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGA 9871 Query 21567 ATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT 21625 |||| | || || ||| || ||||| || | || || || || ||||| |||| ||| Sbjct 9870 ATATAGCTGCGAA-GCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAA 9812 Query 21626 CGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCT 21685 ||||| | | ||||||| ||| ||||| | | |||||| | ||||||| | Sbjct 9811 CGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTT 9752 Query 21686 TTAATACAA--TCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGG 21743 || |||| | | ||| | || || || || ||| | |||| | || Sbjct 9751 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTT 9694 Query 21744 TTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCT 21803 | ||| | ||||||||||| || ||||| || || ||||||| Sbjct 9693 TGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCT 9634 Query 21804 GAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCT-CGGAATAAAATCGTTGAGCC 21862 | | || ||||| || | |||||| || || | | | | ||| |||| Sbjct 9633 GCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAA-CGTTCTAGG 9575 Query 21863 AAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAA 21922 | ||| || ||| ||||| ||||| || ||||| || || || | | ||| ||| Sbjct 9574 AGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA 9515 Query 21923 TATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCT 21982 | ||||| | | | | | ||||| || | |||||| || ||||| || ||| Sbjct 9514 TGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 9455 Query 21983 TCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATT 22042 || |||||||| ||| | |||||| ||||| | | ||||| ||| | |||| | Sbjct 9454 TCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCT 9395 Query 22043 ATTGGAAA 22050 || || || Sbjct 9394 ATGGGGAA 9387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531488171305640