Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1181 228 1e-54 seq2578 91.5 2e-13 >seq1181 Length=30581 Score = 228 bits (252), Expect = 1e-54 Identities = 614/940 (65%), Gaps = 43/940 (5%) Strand=Plus/Minus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 ||| |||||||| || || || || ||||| || || |||||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 33075 CATGAAATCAAACGGATTGGTAACATTATA--------------------------AAtt 33108 ||| |||||||| |||||| | || ||| |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 33109 t--------ttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160 | ||| | | || | |||| | | || || |||| ||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACG-GTTTCTTCACTCGGTGGA 33279 | ||||| || ||||| ||| |||| || || ||| ||| ||| | | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 9985 Query 33280 TGCAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACT 33338 || |||| ||||||||| | | ||| |||||||| || || || || ||||||||||| Sbjct 9984 TG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACT 9927 Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 |||| ||| ||| ||| | ||||| ||||| || || || || |||||||| ||||| Sbjct 9926 GATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATAT 9867 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 | ||||| |||||||| |||| ||||| ||||| ||||| ||||| | | || Sbjct 9866 AGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTC 9807 Query 33459 TCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515 | || || | || || | ||||| | | ||||| | ||||| ||| || Sbjct 9806 TGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 9747 Query 33516 ACAAGGCATCGTTTC-TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574 ||||| | ||| | |||||| || |||||| ||| |||| || ||||| | | Sbjct 9746 ACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGT 9688 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 | ||||| || || | | |||||||| || ||||| || || || || ||||| | | Sbjct 9687 ATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 9628 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTT 33694 | || || || | | |||| | ||||| ||||| | || ||||| | || | Sbjct 9627 CATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTTCT 9568 Query 33695 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 33754 | || ||||||||||| || ||||| || || || || | ||| |||| || Sbjct 9567 CGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACGTT 9508 Query 33755 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTG 33814 | | | || | ||||| ||| |||||| || | ||| || |||||||| | Sbjct 9507 CCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAG 9448 Query 33815 TCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGA 33874 ||||||| || || | ||||| ||||| | | ||||| || | ||||| || |||| Sbjct 9447 TCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGA 9388 Query 33875 AAATAACAAATCTATTTGGATTTGGTGCAAGGATGGGTTC 33914 ||| || || | | ||| |||||| || | |||||| Sbjct 9387 AAAGGACGAAACGGTGTGGGTTTGGTTTCAGTAAGGGTTC 9348 >seq2578 Length=22660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || ||||| || ||||||| || | ||| ||| ||| | ||| || || || || Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63612 ||||| ||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGG--AG 11156 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63672 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 63673 ACGTCT 63678 |||||| Sbjct 11095 ACGTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622463940922760