Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2578 93.3 1e-13 seq7541 91.5 4e-13 >seq2578 Length=22660 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 |||||||| ||||| | || | |||||||||||| ||||| ||||| || || || || Sbjct 12237 CAGATTGAAACAGGCAATCCATTTATGTTGTACAAGGATTCTTGCAATCGTAAATCAAAT 12296 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || || || || || ||||||| ||||||||||| ||||| || |||| || | Sbjct 12297 CACCAACATCTAGGCACAATTCGTTGTAGCAACCTATGCACCGAAATAGTTGAGTATTCT 12356 Query 364264 GCTCCCGACGAGACTGCCGTATGTAA 364289 | || ||||| || || || ||||| Sbjct 12357 TCACCAGACGAAACAGCTGTCTGTAA 12382 >seq7541 Length=12614 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||||||||| ||||| |||||||||||||| || || | || | | || |||||| Sbjct 9686 GGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCAT 9745 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 |||| | | ||||| ||||| ||| ||||| || || ||||||||| |||| || Sbjct 9746 ATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTATTCA 9805 Query 111882 AACCA 111886 ||||| Sbjct 9806 AACCA 9810 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 111351 GGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCA 111410 ||||| || |||||||| | ||||||||||| || ||||||| | |||||| || Sbjct 3964 GGAATCGTAGAAGAACTATTATGGTTTATTCGTGGGTCTACAAATTCTCGTGAACTGGCG 4023 Query 111411 GCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGAT 111461 | ||| |||||| | | ||||||| ||||||||| ||||| ||| ||||| Sbjct 4024 GAAAAGAATGTACATTTCTGGGATGCAAATGGATCTCGTGAATTTTTAGAT 4074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302317229831702