Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1181 232 8e-56 seq2578 105 8e-18 >seq1181 Length=30581 Score = 232 bits (256), Expect = 8e-56 Identities = 596/905 (66%), Gaps = 47/905 (5%) Strand=Plus/Minus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 ||| |||||||| || || || || ||||| || || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 32432 CATGAAATCGAATGGATTGGTAACATTATA--------------------------AAtt 32465 ||| ||||| || |||||| | || ||| |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 32466 t--------ttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATG 32517 | ||| | | || | |||| | | || ||||||| |||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 32518 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 32577 ||||| || ||||||||||| || | | ||||| ||||| | | | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 32578 CTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACT-GTTTCTTCACTCGGTGG 32635 | ||||| || ||| ||||| ||| |||| || || || ||| ||| | | Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 32636 ATACAATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTAC 32694 | |||| ||||||||| | | ||| |||||||| || ||||| || |||||||||| Sbjct 9985 TTG--ATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 32695 TAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATA 32754 | |||||||| ||| ||| | ||||| ||||| || || || || |||||||| |||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 32755 TGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCT 32814 | | || || |||||||| || | ||||| ||||| ||||| ||||| | | | Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 32815 CTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 32871 || || || | || || | ||||| | | ||||| | ||||| ||| | Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 32872 CACAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAAC 32929 |||||| | ||| || ||| || || |||||| ||| |||| || ||||| | Sbjct 9747 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 32930 ATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAA 32989 ||||||||||| || | | |||||||| || ||||| || || || || || || | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 32990 TCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATT 33049 || || ||||| | | |||| | ||||| ||||| | || |||||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 33050 TTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTT 33109 || || ||||||||||| || ||||| || || || || | ||| |||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 33110 TTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCAC 33169 ||| | | || | ||||| ||| |||||| || | |||||| |||||||| Sbjct 9509 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 33170 TGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGG 33229 |||||||| || || | ||||| ||||| | || ||||| || ||||||| || || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 33230 AAAAA 33234 |||| Sbjct 9389 GAAAA 9385 >seq2578 Length=22660 Score = 105 bits (116), Expect = 8e-18 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || || ||||| || ||||||| || | ||| ||| ||| | |||||| || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 63467 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 11156 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 63528 ACGTCT 63533 |||||| Sbjct 11095 ACGTCT 11090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633140452055600