Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1181 248 1e-60 >seq1181 Length=30581 Score = 248 bits (274), Expect = 1e-60 Identities = 539/797 (68%), Gaps = 20/797 (3%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || | |||||| ||||||||| |||||| | ||||||||||| | | | Sbjct 10129 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10070 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || |||||||| || | || || || | || |||| ||| || ||| | | ||| Sbjct 10069 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTG-- 10012 Query 93044 ATTACTCTAC----TATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 |||| || | |||| || |||| | | || || | | || || || | Sbjct 10011 ---ACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAGGCGA 9955 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||||| || || |||||||| || | | || || | Sbjct 9954 AATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCA 9895 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| ||||| ||||| | || || |||||||||||||| | ||||| Sbjct 9894 TAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAGACACCTT 9835 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC---GGAATTACTGCTGATCC 93275 |||| |||||||| || | | |||||| |||||| | | ||||| || | |||| Sbjct 9834 CCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAAT--CTCCA-ATCC 9778 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAAT 93334 | | ||| ||||| | || ||||| || ||||| || ||| | || ||||| || Sbjct 9777 AATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAG 9719 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || | || | || | || ||| ||||||||||| ||||| | ||| ||||||||| Sbjct 9718 AGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCA 9659 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | |||||| || || || || | || || || || | | | || | |||||| Sbjct 9658 GAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGG 9599 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||| || || | |||| ||| || || || || || || || ||||| Sbjct 9598 ACTTCCTGGCTGAAACGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAG 9539 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 ||||| || | | ||| ||||| || || | || ||| ||||||| | || Sbjct 9538 AAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAAT-GTAT 9480 Query 93575 -AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 |||||||| || | ||| || ||||| ||||||||||| || ||| | || || || || Sbjct 9479 GAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 9420 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 | || ||| | || ||||||| || || || | ||| ||||| | ||||| ||| Sbjct 9419 AAAATGCCAGACATCGTGATATTCTATGGGGAAAAGGACGAAACGGTGTGGGTTTGGTTT 9360 Query 93694 TAGTAACGGCTCTAGTT 93710 ||||| || ||||||| Sbjct 9359 CAGTAAGGGTTCTAGTT 9343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556428808273640