Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21369 125 2e-23 seq51030 84.2 5e-11 >seq21369 Length=4562 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || ||| || || ||||||||||||| Sbjct 954 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 895 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | |||||| || || || || ||||| ||||| |||| Sbjct 894 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGG 835 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || |||||||| || || |||||| | ||| | || ||| Sbjct 834 ATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACT 775 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || || ||||| || || |||||||| Sbjct 774 TCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 728 >seq51030 Length=753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 288374 CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCG 288433 |||| || ||||| || |||||||| || || |||| ||| || | || || || | || Sbjct 753 CTTTGTCTTGGATCTTAGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACG 694 Query 288434 TGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 |||||||||| || |||| ||||| |||||||| |||||| Sbjct 693 TGATCGTCTTTCCTGTCAATGTCTTTACGAATATTTGCATT 653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178716390062358