Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq21369 150 7e-31 seq6384 149 2e-30 seq30251 91.5 6e-13 >seq21369 Length=4562 Score = 150 bits (166), Expect = 7e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || ||||| || || |||||||| || || || ||||| | || Sbjct 728 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 787 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||||| |||| |||||||||||||| ||||| || || || || ||| Sbjct 788 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 847 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || |||||||| ||||||||| ||||| | | || |||||| Sbjct 848 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 907 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||||||||| Sbjct 908 ATACAGAAGGAATCAACACTTCA 930 >seq6384 Length=14045 Score = 149 bits (164), Expect = 2e-30 Identities = 255/367 (69%), Gaps = 10/367 (3%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || ||||| || || || || || ||||||| | || |||||||| || Sbjct 8851 AAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 8910 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| |||| ||||| | |||||| | ||||| || || ||||| || Sbjct 8911 GAATCCTATCTTGGCAAAAAGGTTACCCACGCAGTAGTCACTGTCCCAGCCTATTTTAAC 8970 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 |||||||| || || ||||| || ||||| || ||| ||||||||||| ||| | || || Sbjct 8971 GATGCACAGCGCCAGGCAACCAAGGATGCTGGCACA-ATTGCTGGTTTGAATATACTCCG 9029 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 || ||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 9030 GATCATTAATGAACCAACTGCTGCTGCGATTGCTTACGGTCTAG-------ATAAGAAAG 9082 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | || || |||||| | |||||||| |||| || || ||| || ||| ||| Sbjct 9083 ATGGTGAGAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCACTAC 9142 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || ||||||| | || || || |||||| || || |||||||| || ||||| || | Sbjct 9143 TTACAATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTG 9202 Query 451590 GTGAAGA 451596 | || || Sbjct 9203 GAGAGGA 9209 >seq30251 Length=2492 Score = 91.5 bits (100), Expect = 6e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||| ||||| ||||| || ||| ||| || | ||| ||||||||| ||||||| Sbjct 535 ACACGGACAGAAAGGTACTTGTGGAATTCGTTATCGTCAAGAAGATATGCCATTCACATG 476 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||| | ||| |||| ||||||||||| Sbjct 475 TGAAGGAATTACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 416 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 415 TGGACATTTA 406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974147394548588