Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6384 149 5e-30 seq60628 127 2e-23 seq3648 91.5 1e-12 >seq6384 Length=14045 Score = 149 bits (164), Expect = 5e-30 Identities = 379/571 (66%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 9125 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 9069 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 9068 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 9009 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || ||||| || || || || | |||| |||||||||||| || || ||||| Sbjct 9008 ATTGTGCCAGCATCCTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGACAGTG 8949 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | || || | || || | ||| |||| ||| | || | |||||| || | | Sbjct 8948 ACTACTGCGTGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 8889 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT-----ATG 518411 || | ||| | || || | ||||||| | | |||| ||| |||| || Sbjct 8888 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 8833 Query 518412 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATAT 518471 | ||||| | ||||||||| || ||||| ||| ||| || | | | || | Sbjct 8832 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGACTTATGT 8774 Query 518472 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 518531 | ||| ||| | |||| || | || ||||| | || || | || ||||| | Sbjct 8773 CATTTTGTACAGCTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 8714 Query 518532 TATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCA---GATGTTCT 518587 | || |||| || || |||| || | ||| || ||||| ||||| | | | | || Sbjct 8713 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAATCGCTCTCCT 8655 Query 518588 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 518647 | || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 8654 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 8595 Query 518648 TCAACTTTACCATTTTGCCATACACCTACAC 518678 |||||| || ||| ||||||| |||| Sbjct 8594 TCAACTCGGCCTCCTTGAAATACACCAACAC 8564 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 322298 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 9073 CTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 9014 Query 322299 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 322358 | |||||| | ||| ||| ||||| || | |||||| || |||||||| ||||| | Sbjct 9013 CAGCAATTGTGCCAGCATCCTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGA 8954 Query 322359 CAGTAATAACTGC 322371 |||| | ||||| Sbjct 8953 CAGTGACTACTGC 8941 >seq60628 Length=531 Score = 127 bits (140), Expect = 2e-23 Identities = 353/532 (66%), Gaps = 16/532 (3%) Strand=Plus/Plus Query 517606 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATT 517665 ||| |||||||| || ||||||||||| ||||||| || || ||| | | || || || Sbjct 8 AGCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTATTCAACTCCTTCCCGTT 67 Query 517666 GAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATA 517724 ||| || | || || | || | |||||||| ||||||| || || ||||| || | Sbjct 68 GAAGAAGTCCTGCAACAGCTTCTGC-ACCTTAGGGATACGAGTGGAACCACCAACCAACA 126 Query 517725 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 517784 | ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 127 CTATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGAC 186 Query 517785 CAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-G 517841 | | | | || | || | | | || || ||| || | ||||| || | Sbjct 187 CCAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACG 246 Query 517842 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 517901 || | | ||||||| || || |||| || |||| || | | ||||| || | Sbjct 247 TG---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCG 303 Query 517902 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 517961 || | || |||||| ||||||||||||||||| || || | || || || ||| Sbjct 304 AACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTT 361 Query 517962 ATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACA-- 518017 |||| | ||| | ||| || |||| ||| ||| |||| ||| | || | || Sbjct 362 ATTGTCACGAATGTCTTTACTAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACC 419 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 |||||||| |||||||||||||||||||| | |||| || | |||| | || | | Sbjct 420 AGACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCG 479 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCA 518129 || | ||||| |||| | ||| | | |||||| || |||||||||| Sbjct 480 AATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCA 531 >seq3648 Length=19082 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 671617 AGGTTTTTGTCGAAATT-CTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAG 671675 ||||||| | ||||| |||||||| ||| |||| ||| | |||||| || ||||| | Sbjct 3192 AGGTTTTGTTGGAAATAGCTTTTATTCAGG-TCTTTCACCATCTGAATTCTTTTTCCATG 3134 Query 671676 TAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATA 671735 ||| ||||||||||| | | | |||| ||| | |||||||| ||||| ||||||| Sbjct 3133 CTATGAGTGGTCGTGAAGGATTGACTGATACTGCTGTAAAAACTGCAGATACAGGTTATA 3074 Query 671736 TTCAAAGAAAACTTGTTAA 671754 | ||| ||| ||| || || Sbjct 3073 TGCAACGAAGACTGGTCAA 3055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777742728751066