Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq60628 154 2e-32 seq6384 152 7e-32 seq1181 91.5 2e-13 >seq60628 Length=531 Score = 154 bits (170), Expect = 2e-32 Identities = 351/524 (67%), Gaps = 8/524 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || ||||| | |||||||| || || ||||| || Sbjct 12 GCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTATTCAACTCCTTCCCGTTGAAG 71 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| |||| | || | || ||||| || || || ||||| ||||| || ||| Sbjct 72 AAGTCCTGCAACAGCTTCTGCACCTTAGGGATACGAGTGGAACCACCAACCAACACTATT 131 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | | ||||| ||||| | ||||| | | || || ||||| ||| Sbjct 132 TCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACCCA-- 189 Query 7220 CATTTAC---GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 || ||| |||| | || | || |||||||| |||||||| ||||| || || Sbjct 190 -ATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGTG 248 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 || ||||||| || || | ||||| ||||| || | | ||||| | ||||| Sbjct 249 TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGAACTC 308 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 || || || || || || ||||| || |||| | ||||| | |||||| || | Sbjct 309 AATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCACGCTTATTGTCA 368 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGA 7455 ||| ||||| || ||| | ||||||| || | ||||| | || | Sbjct 369 CGAATGTCTTTACTAAATTTCTTCTGGAACTCTTTCACA-AAGTGATCCACCAGACGATT 427 Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 || ||||||||||| |||||||||||||| || || || | || || || || ||||| Sbjct 428 GTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACC 487 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 | ||||| | || | || |||||||| ||||||||||||| Sbjct 488 ATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCA 531 >seq6384 Length=14045 Score = 152 bits (168), Expect = 7e-32 Identities = 252/363 (69%), Gaps = 3/363 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | ||||| || || || || ||||| || | ||| Sbjct 9215 TCGAAGTCCTCTCCACCAAGATGTGTGTCACCATTTGTAGCAACTACTTCGAACACACCG 9156 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||| | | | ||||| || || |||||||| || || ||||| || || | Sbjct 9155 TTCTCAATTGTAAGTAGTGAAACGTCGAAAGTACCACCTCCAAGATCAAATATCAGAATA 9096 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | ||||| |||||| |||||||| || || || || || ||||||||| Sbjct 9095 TTCTTCTCACCATCTTT---CTTATCTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCA 9039 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 ||||| || || || |||| |||||||| || | ||||| || || || || || Sbjct 9038 TTAATGATCCGGAGTATATTCAAACCAGCAATTGTGCCAGCATCCTTGGTTGCCTGGCGC 8979 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||||||| ||||| ||||| || || || |||| || || || || || ||| Sbjct 8978 TGTGCATCGTTAAAATAGGCTGGGACAGTGACTACTGCGTGGGTAACCTTTTTGCCAAGA 8919 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || ||||| || | |||||||| || | ||||| | || ||||| || | ||| Sbjct 8918 TAGGATTCAGCAAACTCTTTCATCTTCCCTAACACCATAGCAGAGATCTCCTCTGGGGCA 8859 Query 7817 AAC 7819 ||| Sbjct 8858 AAC 8856 >seq1181 Length=30581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || ||||| |||||||||||||| || || |||| ||||||||| ||||| Sbjct 10281 ATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTCCAT 10222 Query 115122 AAAATCAAAGGGATT 115136 ||||||||| ||||| Sbjct 10221 AAAATCAAAAGGATT 10207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634640087791240