Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1181 271 9e-68 seq2578 118 1e-21 >seq1181 Length=30581 Score = 271 bits (300), Expect = 9e-68 Identities = 603/903 (67%), Gaps = 44/903 (5%) Strand=Plus/Minus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||||||| |||||| || ||||| || || || ||||| || | ||||||| ||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 18732 CATAAAATCAAATGGATTTTT-------TACA---------------TTATAT----Att 18765 |||||||||||| ||||| | |||| ||| | ||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 18766 t-------ttttGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATG 18817 | |||| | | || | ||| | |||||| || || || | ||||| ||| || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 18818 TGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATT 18877 ||||| | ||||||||||| ||||| | || ||||| || |||| | ||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 18878 CTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGT 18937 | |||||||| || |||||| ||| || || |||| | ||| || | ||| | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACG---TTCCTTGGAAGGCT 9988 Query 18938 AT---AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994 | | || ||||||||| | | ||| || ||||||||||||||||| |||||||||| Sbjct 9987 TTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054 | || |||||||| ||| | | |||||||| || |||| ||| || | |||||||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 19055 TAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTT 19114 ||| || || |||||||| || | |||||| |||||||||||||||| || | || Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 19115 CTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA 19174 || || || ||| | || |||||| | | |||||| | |||||| ||| | Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 19175 CACATGGCA--TTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAAC 19232 |||| | | ||| || ||| | || || ||| | | || | | ||||| | Sbjct 9747 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 |||| ||| || |||||| ||||||||| || |||||||| || ||||| ||||| | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || ||||| || | | |||| ||||| ||||| | || | ||| | | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 || || ||||| ||||| || ||||| || ||||| || | || ||||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 19413 TTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472 ||| | | | | | ||||| | | |||||| || ||||| || ||||| || Sbjct 9509 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 |||||||||||||| | || || ||||| | | ||| | ||| |||||| ||| || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 19533 AAA 19535 || Sbjct 9389 GAA 9387 >seq2578 Length=22660 Score = 118 bits (130), Expect = 1e-21 Identities = 262/387 (68%), Gaps = 7/387 (2%) Strand=Plus/Minus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 14439 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAG 14380 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 |||||||| || || || |||||||||| | | | | || |||||||| | ||| | Sbjct 14379 TTAAGAGACTGGCTTTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 14320 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTA 47225 |||| | |||||||||||||| || || | |||| | || | || | || Sbjct 14319 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCG 14260 Query 47226 GTATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaag 47284 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 14259 ATATGTTGAATAGAACC-CTGATTCAAAACAATAGCTGTTTTAAGTTCGTCCGACCACAA 14201 Query 47285 ttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATA 47343 | || || ||| | | || ||||| ||||| ||||| || ||||| ||| || Sbjct 14200 CCCTAATTTAG-TAAGATCATCAAGAAGATATGGATTCACAATCTGGAATTCACCACTTA 14142 Query 47344 GTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAA 47403 || | || | ||| || ||||| | ||||| |||| ||||| || |||| || Sbjct 14141 ACACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAA 14082 Query 47404 TTTGAGCAGTTGATGCTGTAGGCATGG 47430 |||||| ||||||||||| ||||||| Sbjct 14081 TTTGAGATGTTGATGCTGTTGGCATGG 14055 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 || || ||||| || || |||||||||| | ||||| ||| || ||||| ||||| Sbjct 11276 ATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATG 11217 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAA 48599 |||||||||||||| ||| ||||| | | ||||||||||| || | || || | | Sbjct 11216 CCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGA 11157 Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | ||||| | ||| || || ||||| |||||||||| || || | || ||| Sbjct 11156 GTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTA 11097 Query 48660 TATGT 48664 || || Sbjct 11096 TACGT 11092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561672737072040