Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6384 147 2e-29 seq21369 141 7e-28 >seq6384 Length=14045 Score = 147 bits (162), Expect = 2e-29 Identities = 374/563 (66%), Gaps = 12/563 (2%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | ||| || |||||| |||||||| |||||||| |||||||| | Sbjct 8564 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 8623 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| || || || | ||||| |||| || | ||| |||| ||||| || | Sbjct 8624 TTACTCCCTCATACGTAGCATTCACTCCGGAAGGAGAGCGATTAATTGGGGATGCTGCTA 8683 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || | || || ||||| || || ||||| || | || | | ||||||| Sbjct 8684 AAAACCAGCTGACATCAAATCCAGAAAACACAATTTTCGACGTCAAGAGACTTATTGGAA 8743 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | | || |||| || |||| || || || | |||| ||||| |||||| Sbjct 8744 GGAAGTTCGATGAATCAGCTGTACAAAATGACATAAGTCATTACCCTTTTTCCGTTGTTA 8803 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319 || ||||| ||||| |||| | || | ||||| | | || | ||| Sbjct 8804 ATAAAAAGAACAAACCATATATCGAAGTT---CACGTTGGATCAGAAGTCAAGACGTTTG 8860 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | ||||| | || || ||||||| ||| ||| |||||| | || | | | Sbjct 8861 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 8920 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| || | ||||| | |||||| | ||||| ||||| |||||||| || |||| | Sbjct 8921 TTGGCAAAAAGGTTACCCACGCAGTAGTCACTGTCCCAGCCTATTTTAACGATGCACAGC 8980 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | || || || || |||||||| |||||||| | ||| | || || || || |||| Sbjct 8981 GCCAGGCAACCAAGGATGCTGGCACAATTGCTGGTTTGAATATACTCCGGATCATTAATG 9040 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 |||| ||||||||||| |||| || || || ||||| | ||| | |||| ||| Sbjct 9041 AACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--GAATA 9097 Query 550560 TACTCATCTTTGATTGTGGAGGT 550582 | || || |||||| ||||||| Sbjct 9098 TTCTGATATTTGATCTTGGAGGT 9120 >seq21369 Length=4562 Score = 141 bits (156), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||| || || | ||||||| | Sbjct 945 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 886 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| || | ||| || || || || || |||||| Sbjct 885 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 826 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||||||||| || ||||| || |||||||||| | | ||| || || Sbjct 825 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 766 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || ||||| || || || ||||| ||||| Sbjct 765 ATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTGCAT 728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026013934424890