Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1181 262 5e-65 seq28288 82.4 9e-11 >seq1181 Length=30581 Score = 262 bits (290), Expect = 5e-65 Identities = 573/853 (67%), Gaps = 50/853 (6%) Strand=Plus/Minus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || ||||| |||||||||||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------AGTACTACATGATAATT 36996 |||||||||||| ||||| | || ||| | | | || | || |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 36997 -----------------CC---TTCA----GAAGCCTATCCGCAACAAATTCTATGTATT 37032 || |||| | ||||| || || | |||||| ||||| | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 |||||| |||| | || || ||||||| | ||||| | || ||| | ||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152 | |||||||| || || ||| | | ||| ||| | ||| | | | || | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCT---TGGAAGGCT 9988 Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209 ||| | ||||| ||||| |||| ||| || ||||||||||||| ||||| ||||||| Sbjct 9987 TTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269 | || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| |||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 | ||||| || |||||||| || | |||||| ||||||||||| || | | |||| Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | ||||| || | |||| |||||| | | || ||| | |||||| | || Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 |||| || | ||| || || || || |||||||||| |||||| ||| | || Sbjct 9747 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 || |||||||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT-TAAAAAACCTCTTAGCTAAGT 37566 |||||||| || | | | || | | || || || | |||| | ||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAG-GAGGT 9571 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 | || || || || ||||| || ||||||||||| | || || ||| ||||| | Sbjct 9570 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 9511 Query 37627 TTTCATCA--TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 ||| || ||| | | ||||| | | |||||| || ||||| || || || Sbjct 9510 GTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 9453 Query 37685 AACGGTCCAAAAA 37697 || ||||||||| Sbjct 9452 CACAGTCCAAAAA 9440 >seq28288 Length=2832 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| |||||||||||||| || ||| ||||||| ||| ||| ||| | || || || Sbjct 2223 AGGGGTTTTACATACAAAGTTATGGTCAGTTGATGCCAAAAATGGTTATGTGGGTAGCGC 2282 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGT 153376 |||||||| |||||||||||||| ||||| Sbjct 2283 AAATATGGACTGGAGATCACTAACACAAGT 2312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591857302838440