Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6384 178 8e-39 seq21369 147 1e-29 >seq6384 Length=14045 Score = 178 bits (196), Expect = 8e-39 Identities = 369/539 (68%), Gaps = 14/539 (3%) Strand=Plus/Plus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || ||||| ||||| || ||||| || | || || ||||| || | || || Sbjct 8589 AGTTGAGATTATTGCGAATGATCAGGGTAACAGGATTACTCCCTCATACGTAGCATTCAC 8648 Query 474448 T---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | ||| || | | ||||| |||||||||||| | || |||| |||| ||||| | Sbjct 8649 TCCGGAAGGAGAGCGATTAATTGGGGATGCTGCTAAAAACCA-GCTGACATCAAATCCAG 8707 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || ||||| || | || ||| | ||||| | || || ||||| | |||| | Sbjct 8708 AAAACACAATTTTCGACGTCAAGAGACTTATTGGAAGGAAGTTCGATGAATCAGCTGTAC 8767 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 || ||| || |||||| |||||| || | ||| ||||||||||| | Sbjct 8768 AAAATGACATAAGTCATTACCCTTTTTCCGTTGTTAATAAAAAGAACAAACCATATATCG 8827 Query 474624 AAGCAATACACGCAGG-TGA-AACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGG 474680 ||| | |||| || | | || | || | ||| | || || | || ||| | |||| Sbjct 8828 AAG---TTCACGTTGGATCAGAAGTCAAGACGTTTGCCCCAGAGGAGATCTCTGCTATGG 8884 Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | |||| || |||||| | || || |||||||| || | || || | |||| Sbjct 8885 TGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATCTTGGCAAAAAGGTTACCCACGCAG 8944 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 || | ||||| ||||| |||||||| ||| | || || || ||||| || ||||| || | Sbjct 8945 TAGTCACTGTCCCAGCCTATTTTAACGATGCACAGCGCCAGGCAACCAAGGATGCTGGCA 9004 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| ||| | ||| | | || || |||||||||||||| || || || |||||| Sbjct 9005 CAATTGCTGGTTTGAATATACTCCGGATCATTAATGAACCAACTGCTGCTGCGATTGCTT 9064 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | ||||| |||||||| || ||||| ||| || | || |||||| ||||||| Sbjct 9065 ACGGTCTAGATAAGAAAGATG-GTGAGAAG--AATATTCTGATATTTGATCTTGGAGGT 9120 Score = 98.7 bits (108), Expect = 6e-15 Identities = 318/489 (65%), Gaps = 20/489 (4%) Strand=Plus/Plus Query 475875 TTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGA 475934 |||| ||| | || ||| ||| | | || ||| ||||||| || || || | |||| Sbjct 9677 TTGTGCTTTTAGATGTATGCCCATTGACTTTGGGTATTGAAACGGTCGGTGGTGTCATGA 9736 Query 475935 CTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTT 475994 | || |||||| |||||||| ||||||| ||| || || | ||||||| || Sbjct 9737 CGAAACTTATTCCAAGAAATACAGTTATCCCAACCAAGAAGTCGCAGATATTTTCTACAG 9796 Query 475995 ATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTA 476054 | |||| || || | ||||| || || ||| | ||||| |||||| | | || | Sbjct 9797 CTGCTGACAACCAGCCGACTGTCACGATACAAGTTTTTGAGGGTGAACGGGCTATGAC-A 9855 Query 476055 AAGAT-AATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 ||| | ||| | ||||| | ||| | || |||||||||||| || | | || Sbjct 9856 AAGTTCAATCATTTTCTTGGCAAGTTTGACCTGACAGGTATTCCTCCGGCACTGCGTGGT 9915 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| |||||||| || || || || ||||| | || || || || | ||| | || Sbjct 9916 GTTCCACAAATTGAGGTGACATTCGAGATTGACGTTAACGGCATACTGAGAGTTTCCGCA 9975 Query 476174 TGTGATAAA------TCTAGTAACAAGAGTAAAAATATAACT-ATTACAAACAATCGTGG 476226 |||||| |||||| || |||||| || | | || | || | | | | Sbjct 9976 GAAGATAAAGGAACCGGTAGTAAAAA----CAAAATAGAAATCAATAAAGACCAACATCG 10031 Query 476227 --TAGATTTACTGAAGAACAAATTCAACGTATGGTTGATGAAGCCAAAGAGTTTGAAGAA 476284 |||| || |||| |||| || ||| || |||| || || |||||| || Sbjct 10032 CTTAGA-----TGCAGAAGAAATCGAAAAAATGATTAATGATGCAGAACAGTTTGCAGCT 10086 Query 476285 GCTGATAACAAGAGAAAAGCTGCTATTGATGCAAAGAATGAACTTGAAAATTATGTTCAT 476344 | ||||| ||| ||||| | ||||||| | ||||| | |||| || |||| || Sbjct 10087 TCAGATAAGAAGTTAAAAGAGCGTGTTGATGCCAGAAATGAGTTCGAAAGTTCTGTTTAT 10146 Query 476345 AGTGTAAAA 476353 | | | ||| Sbjct 10147 ACTCTCAAA 10155 >seq21369 Length=4562 Score = 147 bits (162), Expect = 1e-29 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| |||||||||||||| ||| || | |||||| || | ||||| Sbjct 949 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 890 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| ||||| || ||||||||||| ||||||||||| || || || || || Sbjct 889 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 830 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || || || ||||| || ||||||| | | ||| || Sbjct 829 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 770 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| || || || ||||| || ||||| || Sbjct 769 GGTTATAGTTTTTCCCGTAAGTGTCTTCACAAAAATCTG 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265517102590028