Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq60628 215 7e-51 seq47191 183 4e-41 seq42321 176 6e-39 seq6384 176 6e-39 seq21369 172 7e-38 >seq60628 Length=531 Score = 215 bits (238), Expect = 7e-51 Identities = 374/533 (70%), Gaps = 8/533 (2%) Strand=Plus/Minus Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 ||||||||||| |||||||| || | | | ||||| | |||||||||||| || ||| Sbjct 529 GGTGGTGGTACATTTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAAG 470 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA- 196005 |||||||||||||||| || | || ||||||||||| || ||||| | ||| Sbjct 469 TCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGTCTGGTGGATCAC 410 Query 196006 TTTGTCTGATGAGTTCC-GTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTC 196064 ||||| | ||||||| | |||| || ||||| ||| || ||| | || Sbjct 409 TTTGT-GAAAGAGTTCCAGAAGAAA-TTTAGTAAAGACATTCGTGACAATAAGCGTGCAT 352 Query 196065 TTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAA 196124 | ||||| || || || |||||||||||||| ||||| || | ||| | | |||| Sbjct 351 TGCGTCGCCTGAGAACAGCATGTGAACGTGCGAAACGTACATTGAGTTCGAGCACCCAAA 292 Query 196125 CAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTG 196184 | | | |||||||| ||||||| ||| || ||||| || || || | ||||| |||| Sbjct 291 CGAATCTGGAGATTGACTCGTTGTGTGATGGTATTGATTTTTACACGTCGATTACTCGTG 232 Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTA-TGGAACCTGTTGAACAA 196243 |||| ||||| ||||| || | ||| | || | || | ||| |||||||| | Sbjct 231 CACGATTTGAGGAGTTGAATGCCGATCT-ATTCCGTGGTACATTGGGTCCTGTTGAGAAG 173 Query 196244 GTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGA 196303 | | || || || |||||||||||| | || || | ||||| || | || || || Sbjct 172 GCTTTGCGAGATGCTAAGATGGATAAGGCCCAGATTCACGAAATAGTGTTGGTTGGTGGT 113 Query 196304 TCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTT 196362 || || ||||| || ||| | || || || || | | ||||||||| || || || Sbjct 112 TCCACTCGTATCCCTAAGGTGCAGAAGCTG-TTGCAGGACTTCTTCAACGGGAAGGAGTT 54 Query 196363 AAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGG 196415 || ||| | || || ||||||||||| || ||||||||||| || || |||| Sbjct 53 GAATAAATCTATTAATCCGGATGAAGCTGTGGCTTATGGTGCAGCTGTGCAGG 1 >seq47191 Length=907 Score = 183 bits (202), Expect = 4e-41 Identities = 293/418 (70%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 196460 CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 ||| | ||||| || || || | || |||||||||||||| || |||||||| ||||| Sbjct 16 CTGTTGCTTGACGTGGCTCCATTGTCACTGGGTCTTGAAACGGCTGGTGGTGTAATGACG 75 Query 196520 AAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTAT 196579 | ||| | | || || || |||||||| ||| || ||| || | ||||| Sbjct 76 GCTCTGATTAAGCGTAATACGACAATTCCGACGAAGCAGACTCAAACGTTCACGACGTAC 135 Query 196580 TCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAG 196639 || || || || || ||||| | ||| || || | ||| || || || | | | ||| Sbjct 136 TCGGACAACCAGCCTGGTGTGCTTATCCAGGTGTTTGAGGGTGAGCGTGCTCTGACGAAG 195 Query 196640 GATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTT 196699 || ||| |||| ||||| | ||||| | | || || ||| |||| || | ||| | Sbjct 196 GACAACAATCTGCTTGGCAAGTTCGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTACT 255 Query 196700 CCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAG 196759 || |||||| | || || ||||||||||| || || ||||| ||||| | |||| Sbjct 256 CCCCAGATTGAGGTGACGTTTGATATAGACGCGAACGGTATTCTGAACGTATCTGCTGTT 315 Query 196760 GACAAGGCTTCTGGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTC 196818 ||||||| | | || || | ||| ||||| |||||| ||||||||||| || | | Sbjct 316 GACAAGGGTACAGG-GAAGCAGAACAAGATAACGATTACAAATGACAAGGGTCGTTTGAC 374 Query 196819 TAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 |||||||| |||||||| ||||| |||||||| ||||||| || || || ||| Sbjct 375 GAAGGAGGAGATTGAACGAATGGTAGCCGATGCGGACAAGTACAAGGCTGAGGATGAG 432 >seq42321 Length=1182 Score = 176 bits (194), Expect = 6e-39 Identities = 413/617 (67%), Gaps = 10/617 (2%) Strand=Plus/Minus Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 || || || |||||||||||| | || || | ||||| || | || || || || | Sbjct 1176 CGAGATGCTAAGATGGATAAGGCCCAGATTCACGAAATAGTGTTGGTTGGTGGTTCCGCT 1117 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAA 196368 ||||| || ||| | || || || || | | ||||||||| || || || ||||| Sbjct 1116 CGTATCCCTAAGGTGCAGAAGCTG-TTGCAGGACTTCTTCAACGGGAAGGAGTTGAACAA 1058 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | | || || | |||| |||| || | ||||||||| | || ||||| |||||||| Sbjct 1057 ATCTATTAATCGGGATAAAGCTGTGGTTTATGGTGCACCTGTGCAGGCAGCTATTCT--- 1001 Query 196429 AGGTGTTGACAATAATAACG---TCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485 | ||| |||||| | | | | || || | ||| | ||||| || | || | || Sbjct 1000 AAGTGGTGACAAGTGTGAGGCTGTGCAGGACTTGCTGTTGCTTGACGTGACTCCACTGTC 941 Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545 |||||||||||||| || || ||||| ||||| | ||| | | |||||||| || Sbjct 940 ACTGGGTCTTGAAACGGCTGGAGGTGTGATGACGGCTCTGATTAAGCGTAACACAACAAT 881 Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATAT 196605 |||||| ||| || ||| || || | ||| || || || | || |||| | ||| Sbjct 880 TCCGACGAAGCAGACTCAAACGTTCTCGATGTACTCAGACAACTAGCCTCGTGTGCTTAT 821 Query 196606 TCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGA 196665 || || | || || || || | | | ||||| ||| |||| |||| | ||||| Sbjct 820 CCAGGTGTTCGAGGGTGAGCGTACTCTGACGAAGGACAACAATCTGATTGGCAAGTTCGA 761 Query 196666 TTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATAT 196725 | | | || ||| |||| || | ||| ||| | ||| | | || ||||| Sbjct 760 ACTCTCAAGTATCCCACCTGCTCCTCGTGGTACTCCCCCTATTGAGATGACGTTTGATAT 701 Query 196726 AGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAA-A 196784 ||| || || || ||| | ||||| | |||| ||||||| | | || | | ||| | Sbjct 700 AGATGCGAACGGTATTATGAACGTATCTGCTGTTGACAAGGGTACAGG-GGAGCAGAACA 642 Query 196785 AGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTC 196844 |||| || || ||||||||||| || | | || ||||| |||||||| ||||| Sbjct 641 AGATAACAATCACAAATGACAAGGGTCGTTTAACGAAAGAGGAGATTGAACGAATGGTAG 582 Query 196845 AAGATGCGGAAAAGTAC 196861 |||||||| |||||| Sbjct 581 CCGATGCGGACAAGTAC 565 >seq6384 Length=14045 Score = 176 bits (194), Expect = 6e-39 Identities = 269/383 (70%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 195626 TTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCT 195685 ||||| || || || || || |||||||||| |||||||| ||| ||| ||||| Sbjct 8857 TTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCC 8916 Query 195686 TTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCA 195745 | | || |||| || | | ||||| || ||||| || || || || | ||| || Sbjct 8917 TATCTTGGCAAAAAGGTTACCCACGCAGTAGTCACTGTCCCAGCCTATTTTAACGATGCA 8976 Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || ||||| || ||||| |||| | ||||| ||| | || || | || || Sbjct 8977 CAGCGCCAGGCAACCAAGGATGCTGGCACAATTGCTGGTTTGAATATACTCCGGATCATT 9036 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 ||||||||||| || ||||| |||||||| ||||| || ||| || || | || || Sbjct 9037 AATGAACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAG---AAAGATGGTGAGAAG 9093 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||| | |||| |||||||| || |||||||| || || || ||||| || | ||||| Sbjct 9094 AATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCACTACTTACAATTGAG 9153 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 ||| | ||||||||| ||||| |||||| || ||||| ||||| || || ||| Sbjct 9154 AACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTGGAGAGGACTTC 9213 Query 195986 GATGCACGTCTTCTCCGTCATTT 196008 || |||| || | |||||| Sbjct 9214 GACCAACGTGTTGTTGATCATTT 9236 >seq21369 Length=4562 Score = 172 bits (190), Expect = 7e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| || |||||||| || ||||| ||||||||||| ||||| || |||||| | Sbjct 725 AGGATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCT 784 Query 171919 TCAGACACAATCGATAACA-TCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGA 171977 | || ||||| || | || | || || || ||||||||||| |||||||| ||||| || Sbjct 785 GCTGATACAATAGA-AGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGA 843 Query 171978 TCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTA 172037 || ||||| || ||||||||||| ||||| || ||||||||||| || || | || || Sbjct 844 CCAACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTA 903 Query 172038 CAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || ||||| || || || || ||||| || | ||||| |||||| Sbjct 904 TAATATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGT 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657352055019920