Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1181 170 3e-37 seq21369 102 1e-16 >seq1181 Length=30581 Score = 170 bits (188), Expect = 3e-37 Identities = 476/720 (66%), Gaps = 31/720 (4%) Strand=Plus/Minus Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046 || ||||| | |||||| | || || |||||| | ||||||||| || | || ||| Sbjct 10129 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10070 Query 18047 AAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105 | |||||||| || |||| || | || | ||||| ||| | |||| ||||||| Sbjct 10069 ACTGGTAGAGCTTCTGATAAAAACTCCTGT-TCTATTAGAACCGCCTCTCTTATTAT--- 10014 Query 18106 TATTACCCTAGA--TT--TTGGCAAT-TTATTAATTATGTGATTATAATATAATAAACAC 18160 | || | | | || |||| | || || || || || ||| | ||||| ||| Sbjct 10013 --TGACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAA---TAATAGACAG 9959 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 || |||||| |||| ||||| ||||| |||||||| || ||||| | | || Sbjct 9958 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 9899 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||||| ||| || ||||| ||||| | |||||| |||| |||||| || | | Sbjct 9898 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAGACA 9839 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT--ATTGCTCAGTA 18338 || || || || || || ||||| | ||| |||||| | |||| | | || | Sbjct 9838 CCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCA--A 9781 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| | | |||||| | | | | ||| | || | ||| || || | Sbjct 9780 TCCAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGA 9721 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | | || |||||||||| ||||| || || || || ||||| ||||| ||||||| Sbjct 9720 AGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTT 9661 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATAT 18517 |||| || || | || ||||||||||| | | |||||| | | | |||| ||||| | Sbjct 9660 CAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCT 9601 Query 18518 TGAAT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | || ||| || | ||||| | ||||| || || |||||| | | Sbjct 9600 GGACTTCCTGGCT---GAAACGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCG 9544 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | || || || || || || |||||||| ||| | ||||||| | ||| Sbjct 9543 CAAAGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCA-- 9486 Query 18636 CATCTAT---ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || ||| |||||| || | ||| || |||||| ||||||||||| | | | |||| Sbjct 9485 -ATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCT 9427 >seq21369 Length=4562 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | || ||||||||||| || ||||||| || | || Sbjct 728 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 787 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || || ||||| ||||||||||||||||| || ||||| ||| Sbjct 788 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 847 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || || || |||||| ||||| | || || |||||| Sbjct 848 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 907 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || || | || |||||| Sbjct 908 ATACAGAAGGAATCAACACTTCAT 931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731304241147600