Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1181 107 6e-18 seq2770 91.5 4e-13 seq30251 89.7 2e-12 seq29249 89.7 2e-12 >seq1181 Length=30581 Score = 107 bits (118), Expect = 6e-18 Identities = 257/384 (67%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || ||||| |||||||| || ||||| || || || | | ||| || | Sbjct 9531 TTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGTTTCAGC 9590 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 ||||| || | | || | ||| |||||||||| | ||||| || || || ||| Sbjct 9591 CAGGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGAGAAT 9650 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 || || ||| | || ||| |||||||||| ||||||||||| || | | | Sbjct 9651 ATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGG 9710 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 || || ||||||||||| ||| | || ||||| || ||| || || | ||||| Sbjct 9711 GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC- 9769 Query 133469 ATTA-AATGGATCCAGGACAAGC--GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 |||| | ||||| ||| | | | | |||||| ||| | |||||||||| Sbjct 9770 ATTAGATTGGAT--TGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCA 9827 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585 | ||| || || | ||||| |||| ||| |||| || |||||||| || || Sbjct 9828 GCAGTGGAAGGTGTCTTTTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGA 9887 Query 133586 GGTATTCTACCTGGACTGTGTTTT 133609 ||| || | |||||||||| |||| Sbjct 9888 GGTCTTATGCCTGGACTGTCTTTT 9911 >seq2770 Length=21803 Score = 91.5 bits (100), Expect = 4e-13 Identities = 213/319 (67%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 302563 ATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTT 302622 ||||||| ||||||| || |||| |||||| ||||| || |||||| | ||| Sbjct 9758 ATCATAACTGATTCCATAGCTTTAATTAGACGACGTTGAATGTACCCAGTTTCGGCAGTT 9699 Query 302623 TTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCC 302682 || || || || || || | || | |||||||||||||| ||||| || | || Sbjct 9698 TTGACTGCAGTGTCTATCAAGCCTTCTCGACCACCCATAGCGTGGAAAAAAAATTCAGTG 9639 Query 302683 GGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCG 302742 || || || ||| ||||| | |||||||| ||||| | ||| || || || Sbjct 9638 GGCGTTAAACCAGCAAGGTAGGAGTTTTCAACGAAGCCACGAGACTCAGGACCATAATC- 9580 Query 302743 AACTTGG-TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 | ||||| |||| ||||| || || | | | | ||| | || || | || || || Sbjct 9579 ATCTTGGATAAAATGTGGTAGCGTACGATGACGAAAACCGAAGGGAATTCTTTTACCTTC 9520 Query 302802 AACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGA 302861 |||||| || || |||| || | || | || |||||||| | | | || ||||| Sbjct 9519 AACGTTTTGTTGACCCACACAAGCGATGACTTGAGAAATATTAATACGAGAACCTTTGGA 9460 Query 302862 GCCAGCATTTACCATAATA 302880 ||||| ||||||||| Sbjct 9459 ACCAGCGACGACCATAATA 9441 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 304033 TTGGGGTCAGGTGTAATTACAGAGCGAGCACTAAAATCAACACGCTTACCCATAAGATTA 304092 |||||||| | ||| || |||| ||||| || ||||||||||| |||||||||||| Sbjct 8258 TTGGGGTCGGCTGTGATAACAGTACGAGCTGAGAAGTCAACACGCTTTCCCATAAGATTA 8199 Query 304093 CCCCTAACACGACCGCCCTTACCGTTTAGCCTATCCTTGATTGCCTTCAGGGGGCGACCC 304152 || | || |||||| | ||||| || || | | ||||| | |||||| ||||| || Sbjct 8198 CCTCGAATACGACCAGCTTTACCTTTGAGTCGTTGTTTGATAGACTTCAGTGGGCGTCCA 8139 Query 304153 GA 304154 || Sbjct 8138 GA 8137 >seq30251 Length=2492 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| |||||||| || ||||| || || || || ||| | | ||| ||| Sbjct 416 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTAATTCCTTCA 475 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | |||| | ||||| ||| || || |||||||| Sbjct 476 CATGTGAATGGCATAT-CTTCTTGACGATAACGAATTCCACAAGTACCTTTCTGTCCGTG 534 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 535 TCGACTAGCGAATTTATCACCAA 557 >seq29249 Length=2658 Score = 89.7 bits (98), Expect = 2e-12 Identities = 172/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Plus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| |||| || ||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 1346 TGCACCATGTGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAGACCACCATCACG 1405 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || ||| |||||| | || ||| ||| |||||| || || || Sbjct 1406 ACTACGACCTTCCATAGGTTGACGATTAAGTATTTGAAC---AGGACCACGAGAACGACT 1462 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| ||||||| |||||||| || | ||| || || | | || || | ||| || Sbjct 1463 ATGAATTTTATCATCAACCATATGTTTTAAACGTTGATAATAAGTTGGTCCTAAGAAAAT 1522 Query 251661 GCTCGAA-GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| |||| || |||||| | | |||||||||| ||| || || || || Sbjct 1523 TTGTGAATTTAATTTTCT-TCCAGTAAATCCATTATACATAATTTCATTACCGGTATGTT 1581 Query 251720 CATAACCA 251727 ||||||| Sbjct 1582 GATAACCA 1589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470647274576557