Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq29249 114 2e-20 >seq29249 Length=2658 Score = 114 bits (126), Expect = 2e-20 Identities = 199/285 (70%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 194544 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 194602 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 1568 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 1510 Query 194603 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 194662 |||||||||| || ||| | ||||| |||||| | |||||||| ||| | | || || Sbjct 1509 CAACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCTCGTG 1450 Query 194663 GGCAAGT--AACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 194720 | | || || ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 1449 GTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 1392 Query 194721 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 194780 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| ||| Sbjct 1391 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCACATGGTGCAGCACAATTTTTACG 1332 Query 194781 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 194825 |||| | | ||||| | |||||| | |||||| ||||||| Sbjct 1331 TGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTATATGTTTG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631998938286680