Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq29249 113 6e-20 >seq29249 Length=2658 Score = 113 bits (124), Expect = 6e-20 Identities = 212/307 (69%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 193726 ATGGTTTTGATTATACTGGGTCTGAAACAATGTATTGTGGGTTTACTGGTAAAAGAATTG 193785 |||||| | | |||| || ||||| |||||| ||| |||||||| | || |||| Sbjct 1590 ATGGTTATCAACATACCGGTAATGAAATTATGTATAATGGATTTACTGGAAGAA-AATTA 1532 Query 193786 AAAATA-AAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGAT 193844 || | ||||||| |||| |||||||||||||| ||| | |||||||||||| | ||| Sbjct 1531 AATTCACAAATTTTCTTAGGACCAACTTATTATCAACGTTTAAAACATATGGTTGATGAT 1472 Query 193845 AAAATGCATGCTAGAAGTCATGGACAAGT--GACTACTTTACATCGACAACCAAATTGTG 193902 ||||| ||| | | || ||| | || | ||||| |||| ||||| | | Sbjct 1471 AAAATTCATAGTCGTTCTCGTGGTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAG 1414 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTC 193962 ||||| || | ||| ||| || | ||||| |||||||| || ||| ||| | Sbjct 1413 GTCGTAGTCGTGATGGTGGTCTACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCAC 1354 Query 193963 ATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCG 194022 ||||||| | ||||| || |||| | | ||||| | |||||| | |||||| Sbjct 1353 ATGGTGCAGCACAATTTTTACGTGAACGTTTATTTTTTGCTAGTGATCCATATCAAGTAT 1294 Query 194023 ATGTTTG 194029 ||||||| Sbjct 1293 ATGTTTG 1287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634684853037080