Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq29249 104 3e-17 >seq29249 Length=2658 Score = 104 bits (114), Expect = 3e-17 Identities = 195/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934 |||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| || Sbjct 1567 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 1509 Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGG 201994 ||| || ||||| ||| | |||||||||||| | |||||||| ||| | || ||| Sbjct 1508 AACTTATTATCAACGTTTAAAACATATGGTTGATGATAAAATTCATAGTCGTTCTCGTGG 1449 Query 201995 TCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAG 202054 || || || | | |||||||||| | ||||| | | |||||| || | Sbjct 1448 TCCTGTTCAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCTACG 1389 Query 202055 ATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGA 202114 ||||| ||||||||| |||||| | | ||||| || ||||||||||| ||| Sbjct 1388 TTTTGGTGAAATGGAACGTGATTGTCAAATAGCACATGGTGCAGCACAATTTTTACGTGA 1329 Query 202115 AAGAATGTTTTTGTATTCAGATCCTTTTCAAATCGATGTGTGTA 202158 | | | ||||| | ||||| | |||| | |||| |||| Sbjct 1328 ACGTTTATTTTTTGCTAGTGATCCATATCAAGTATATGTTTGTA 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654771658349000