Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6384 149 5e-30 seq60628 131 1e-24 seq3648 87.8 1e-11 >seq6384 Length=14045 Score = 149 bits (164), Expect = 5e-30 Identities = 379/571 (66%), Gaps = 18/571 (3%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 9125 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 9069 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 9068 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAACCAGCA 9009 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || ||||| || || || || | |||| |||||||||||| || || ||||| Sbjct 9008 ATTGTGCCAGCATCCTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGACAGTG 8949 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | || || | || || | ||| |||| ||| | || | |||||| || | | Sbjct 8948 ACTACTGCGTGGGTAACCTTTTTGCCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 8889 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT-----ATG 282578 || | ||| | || || | ||||| | | | |||| ||| |||| || Sbjct 8888 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTG 8833 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | ||||| | ||||||||| || ||||| ||| ||| || ||| | || | Sbjct 8832 A-ACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAATGACTTATGT 8774 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 | ||| ||| | |||| || | || ||||| | || || | || ||||| | Sbjct 8773 CATTTTGTACAGCTGATTCATCGAACTTCCTTCCAATAAGTCTCTTGACGTCGAAAATTG 8714 Query 282699 TATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCA---GATGTTCT 282754 | || |||||| || |||| || | ||| || ||||| ||||| | | | | || Sbjct 8713 TGTTTTCTGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAATCGCTCTCCT 8655 Query 282755 GTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATT 282814 | || |||| || ||||| ||||| | | ||||| ||||||||||||||||| Sbjct 8654 TCCGGAGTGAATGCTACGTATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATC 8595 Query 282815 TCAACTTTACCATTTTGCCATACACCTACAC 282845 |||||| || ||| ||||||| |||| Sbjct 8594 TCAACTCGGCCTCCTTGAAATACACCAACAC 8564 Score = 87.8 bits (96), Expect = 1e-11 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 86114 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAAC 86173 ||| |||||| |||| || || ||||||||||||||||| || || | || |||| Sbjct 9073 CTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGGAGTATATTCAAAC 9014 Query 86174 CCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTA 86233 | |||||| | ||| ||| ||||| || | |||||| || |||||||| ||||| | Sbjct 9013 CAGCAATTGTGCCAGCATCCTTGGTTGCCTGGCGCTGTGCATCGTTAAAATAGGCTGGGA 8954 Query 86234 CAGTAATAACTGC 86246 |||| | ||||| Sbjct 8953 CAGTGACTACTGC 8941 >seq60628 Length=531 Score = 131 bits (144), Expect = 1e-24 Identities = 354/532 (67%), Gaps = 16/532 (3%) Strand=Plus/Plus Query 281773 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATT 281832 ||| |||||||| || ||||||||||| ||||||| || || ||| | | || || || Sbjct 8 AGCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTATTCAACTCCTTCCCGTT 67 Query 281833 GAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATA 281891 ||| || | || || | || | |||||||| ||||||| || || ||||| || | Sbjct 68 GAAGAAGTCCTGCAACAGCTTCTGC-ACCTTAGGGATACGAGTGGAACCACCAACCAACA 126 Query 281892 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 | ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 127 CTATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGAC 186 Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-G 282008 | | | | | || | || | | | || || ||| || | ||||| || | Sbjct 187 CCAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACG 246 Query 282009 TGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 || | | ||||||| || || |||| || |||| || | | ||||| || | Sbjct 247 TG---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCG 303 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTG 282128 || | || |||||| ||||||||||||||||| || || | || || || ||| Sbjct 304 AACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTT 361 Query 282129 ATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACA-- 282184 |||| | ||| | ||| || |||| ||| ||| |||| ||| | || | || Sbjct 362 ATTGTCACGAATGTCTTTACTAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACC 419 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 |||||||| |||||||||||||||||||| | |||| || | |||| | || | | Sbjct 420 AGACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCG 479 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCA 282296 || | ||||| |||| | ||| | | |||||| || |||||||||| Sbjct 480 AATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCA 531 >seq3648 Length=19082 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 435118 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAAT 435177 |||||| ||| | |||||| || ||||| | ||| |||||||||||| | | | || Sbjct 3164 GGTCTTTCACCATCTGAATTCTTTTTCCATGCTATGAGTGGTCGTGAAGGATTGACTGAT 3105 Query 435178 ACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAG 435228 || ||| | |||||||| ||||| |||||||| ||| ||| ||| |||||| Sbjct 3104 ACTGCTGTAAAAACTGCAGATACAGGTTATATGCAACGAAGACTGGTCAAG 3054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737583467169786