Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2770 113 1e-19 seq11767 87.8 4e-12 >seq2770 Length=21803 Score = 113 bits (124), Expect = 1e-19 Identities = 344/522 (66%), Gaps = 35/522 (7%) Strand=Plus/Plus Query 304979 CAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGAT 305038 ||||| | |||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 8164 CAACGACTCAAAGGTAAAGCTGGTCGTATTCGAGGTAATCTTATGGGAAAGCGTGTTGAC 8223 Query 305039 TTTAGTGCAAGAAGTGTAATCACACCTGAT-----TCTCAAATTAGTCTTCATGAATTAG 305093 || || | | ||| |||||| | || |||||| |||| || || ||| Sbjct 8224 TTCTCAGCTCGTACTGTTATCACAGCCGACCCCAATCTCAATTTAG-----ATCAAGTAG 8278 Query 305094 GAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAGAGAAAGTTAACGAGAAAAATA 305153 | || ||| ||| ||| ||| ||||| | ||| ||| ||||| | || | Sbjct 8279 GCGTCCCACGAACAATAGCTCAAAATCTAACTTATCCTGAGGTAGTTACTCAATTTAACA 8338 Query 305154 TTAAACATTTG-AGACGTTGTGTTCTTAATGGAAATAGCAAGTATCCAGGTGCTC-GTGC 305211 | | || ||| | | | | || | ||||||| | ||||| |||||| || Sbjct 8339 TAGATCACTTGCAAAAGCTA-GTACAGAATGGAAC---CCTTTATCCTGGTGCTAAGT-- 8392 Query 305212 TGTTATAAAACACAAGCAAAAGAAGACAATATCTTTGAACCATATCGATTTAAAACAATT 305271 ||||| || || || | ||| ||| | || ||||| |||| || Sbjct 8393 --TTATAGTACGTGAG--AATGGAGATCGTATAGATTTACGATATCATCCTAAAGT--TT 8446 Query 305272 CAG---TAAAATGCTTGAAATTAATGATATTGTTATCAGACATTTG---AATGACAATGA 305325 ||| ||| | ||| | || | | |||||| | ||| || ||||| ||| Sbjct 8447 CAGACCTAACA--CTTCAGGTTGGTTACATTGTTGAGCGGCATATGTTAAATGA---TGA 8501 Query 305326 TTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGT 305385 | || | |||||| | |||||| | || |||||||||||||||||| |||| || Sbjct 8502 CTTTGTGATATTCAATCGTCAACCAACGCTTCATAAAATGTCTATGATGTGTCATCGTGT 8561 Query 305386 CAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| || || | | || ||||| |||||| || || | | | ||||||||||| Sbjct 8562 TAAAGTCTTGCCTTGGTCTACGTTTCGTTTAAATCTATCTGTTACTTCACCTTATAATGC 8621 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||||| ||||| ||||||||||| | ||| | || ||||| Sbjct 8622 TGATTTCGATGGCGATGAAATGAACTTACATCTCCCACAATC 8663 >seq11767 Length=8926 Score = 87.8 bits (96), Expect = 4e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| ||||||||||| ||||||| || | Sbjct 1643 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGTGCAGAAAATAAGGTTA 1701 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||| | |||| | || |||||| | ||||||||||| |||| ||| || || Sbjct 1702 CTAACTGACGACGACAGAAAAATTCAAAGCCATCTTCAACTACTTGATGCGCTCG 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185869098013621