Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1181 181 1e-40 seq2578 95.1 2e-14 >seq1181 Length=30581 Score = 181 bits (200), Expect = 1e-40 Identities = 444/677 (66%), Gaps = 57/677 (8%) Strand=Plus/Minus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| ||||||||||| || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAt---------------------------tt 39420 ||| |||||||| ||||| | || ||| || Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 39421 t-------tttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATG 39473 | |||| | | || | ||| | | || ||||| | |||||| ||||| Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 39474 TTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACT 39533 ||||| || ||||||||||| || | | ||||||||||| || | || ||||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 39534 CTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCAC--TCGGTGG 39591 | | ||| || || |||||| ||||||| || |||| ||| || ||| Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGA---------CTCAACACGTTCCTTGG 9994 Query 39592 ATGCA------ATAA-ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCAT 39644 | | |||| ||||||||| | || |||||||| ||||||||||| || || | Sbjct 9993 AAGGCTTTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGT 9934 Query 39645 CTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCC 39704 ||||||| |||||||| || ||| | ||||||||||| ||||| || || || |||| Sbjct 9933 CTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCC 9874 Query 39705 AAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAA 39764 | ||||| || || || |||||||| |||| ||||| ||||||||||| |||| | Sbjct 9873 AGAATATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTA 9814 Query 39765 GTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCT 39821 | ||| | || | | | || | ||||| | |||||| | ||| || | Sbjct 9813 AACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTT 9754 Query 39822 TCTTTACACAAGGCATTGTTTC-TATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880 | ||||||| | ||| | ||| || || |||||| | | |||| | ||| Sbjct 9753 TTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCT 9695 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 || | |||||||| ||||| | | |||||||| || || || || || || || ||| Sbjct 9694 TTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATC 9635 Query 39941 TGAAATCCGTAAAAACA 39957 || | || ||||| || Sbjct 9634 TGCATCCCATAAAAGCA 9618 >seq2578 Length=22660 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 || |||||| |||| ||||||||||||| || || | || ||| || ||| Sbjct 11343 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 11284 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 | | || || || || || || ||||||| || | ||||| ||||| || || Sbjct 11283 GACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATC 11224 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || ||||| ||||| ||| |||| | | ||||||||| || || | || | Sbjct 11223 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGG 11164 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043 | |||||| || ||||| | ||| || || || || || |||||||||||||| | Sbjct 11163 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACAT 11104 Query 70044 CAGATTGTATGT 70055 ||| || || || Sbjct 11103 CAGGTTATACGT 11092 Score = 93.3 bits (102), Expect = 6e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || || || || ||| |||||| ||||||| || ||||| Sbjct 12751 TACATTGTTTCAAATATACGTTTGTTAAGGTCTGCCGCTTCTGGACTATCAAAGGGATAC 12692 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| ||||| ||||||||| || ||||||||||||||||| || | ||| | | Sbjct 12691 CTCAAAAGACAAAATGTATCTGCCAAACCTTGAACCCCAATACCGATCGGCCGATGACGC 12632 Query 69136 TTATTTGAACT 69146 ||||||| || Sbjct 12631 ATATTTGATCT 12621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686375921912040