Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1181 158 1e-33 seq17479 143 2e-29 seq7541 89.7 4e-13 >seq1181 Length=30581 Score = 158 bits (174), Expect = 1e-33 Identities = 595/931 (64%), Gaps = 52/931 (6%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || ||||||| || | ||||| | || || || || || Sbjct 9378 TTCGTCCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCT 9437 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || |||||| | ||||| | ||||||| | | Sbjct 9438 TCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACATTGGGAGTCGCTC 9497 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| ||||| ||||| | || || || || ||||| ||||| ||||| Sbjct 9498 AAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGACGGA 9557 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAG-AAGTTCAATTACCAGAAGCACG 43938 || || || || | | || |||| || || |||| || | ||||| | || Sbjct 9558 ATTGTACTCGAGAACCTCCT-AGAACGTTTCAGCCAGGAAGTCCAGATCCCAGAGGTTCG 9616 Query 43939 ATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 || ||||||||| | || || || || || |||||||| || ||||||||| | | | Sbjct 9617 TTGCTTTTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATT 9676 Query 43999 GATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAA 44057 || ||||| ||||||||||| | || | | | | || || || ||| | || Sbjct 9677 AATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAA 9736 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114 | || || | | || | || || | ||||| | | ||||| | |||| || Sbjct 9737 CTTAACTTGTGTTGCAAAA-AAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAAT 9795 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | |||||| |||||| | | || ||||||| |||||||| | || ||||| || Sbjct 9796 CTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGTA 9855 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 || || || ||||| ||| | |||||||||||| | |||||||| || | ||| | Sbjct 9856 GCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCA 9915 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 |||| ||||| ||| | || ||||| ||||||| ||||| || || | ||| || | Sbjct 9916 ATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCCTGTCTATTATTTAAAC 9975 Query 44295 ATCTAGGAGACGATAAGCCTT-CATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 || | | | ||||||| || | || | | | || | |||||| || Sbjct 9976 ATAT---TATCAAAAAGCCTTCCAAGGAACGTGTTGAGTCA-ATAATAAGAGAGGCGGTT 10031 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT--- 44410 |||||||| || ||| | || ||| |||| || | ||||| ||||||||| Sbjct 10032 CTAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGC 10091 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 ||| ||||| || || ||||||| || ||||| | |||| | ||||| ||| Sbjct 10092 AAAC---TGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGT 10148 Query 44471 TGCGATAA-------ACACTATATTGTA---------------------------CAAAA 44496 | || || | | | | || || | || Sbjct 10149 TATGAAAAGGTTTGTAAATTTTCTTCTAATCGTTTTCGTTTAGGTGTATCATTCTGACAA 10208 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || |||||||||||||||||||| || | ||||| || |||||||||||||| || || Sbjct 10209 TCCTTTTGATTTTATGGAAAATATATCAATCGAAGGAAAGACAAACTTTTTTGAGAAGCG 10268 Query 44557 CGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| |||||||| || || |||||| Sbjct 10269 AGTTGGTGAATATCAACGTGCTGGTGTCATG 10299 >seq17479 Length=5980 Score = 143 bits (158), Expect = 2e-29 Identities = 189/258 (73%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||||| || |||| || || ||||| ||| ||| |||||| |||| || Sbjct 1275 AAACATGTCCGTGGTATTCTGCTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCA 1334 Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | |||| || ||||| |||||||| |||||||| Sbjct 1335 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 1391 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||||||||| ||| |||| |||| ||| | || || || ||||| ||| Sbjct 1392 ATATTAGATAAATATGTCGGTGAATCTGAAGCGAATATCCGTAAATTATTCGCTGATGCT 1451 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||| ||||||| | ||| |||||| | | ||||| ||||| ||| | ||||| Sbjct 1452 GAAGAAGAAGAAAAACGCAT-GGGTGCAAAATCTGCATTGCATATTATTATATTTGATGA 1510 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || || || ||||| Sbjct 1511 AATTGATGCCATTTGTAA 1528 >seq7541 Length=12614 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || || ||||| || || || ||||||||| | | || ||||||||||| || Sbjct 9685 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 9744 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 |||| ||||||||||||||| || |||||||| | || |||| |||||||| Sbjct 9745 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTA 9801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397155376826305