Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1181 239 4e-58 >seq1181 Length=30581 Score = 239 bits (264), Expect = 4e-58 Identities = 499/738 (68%), Gaps = 18/738 (2%) Strand=Plus/Minus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 ||| || | |||||| || ||||| | ||| |||| ||| || ||||||||||| || || Sbjct 10127 GTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTGAC 10068 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||||| || | || |||||||| |||||||| || || ||| | ||||| | Sbjct 10067 TGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTC 10008 Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | || || || || || || || || || | ||| |||| ||| || |||||| Sbjct 10007 AACACGTTCCTTGGAAGGCTTTTTGATAATATGTTT--AAATAATAGACAGGCGAAATCA 9950 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | | Sbjct 9949 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 9890 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || |||||||| |||||||| || || |||||||| || | ||||| || Sbjct 9889 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACT 9830 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTT 4736 || ||||| || | ||| || | || | | | |||| ||| |||||| | | Sbjct 9829 GCTGCAAAAGCAATTAAACGTTCTGCAAAAG---TAGATTTGGAATCTCCAATCCAATCT 9773 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---AT 4793 |||||||| | ||| ||||| ||| || | | || ||| ||||| || | | Sbjct 9772 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAG 9713 Query 4794 TTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | |||| || ||| ||||| || || || || |||| || ||||||||||| Sbjct 9712 TCCCTTTCTT----TGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 9657 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || ||||| || ||||| ||||| | || |||||||| | | | |||| | || || Sbjct 9656 GTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGAC 9597 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | || | ||||| | ||| ||| ||| || |||||||| || ||||| || Sbjct 9596 TTCCTGGCTGAAACGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAA 9537 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 || || || | ||||| || | |||| || ||| || | ||| || | Sbjct 9536 AGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAG 9477 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 |||||| | ||||| || ||||| ||||||||||| || ||| | || || || || | Sbjct 9476 ATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAA 9417 Query 5093 AGACCAAATATCAGGATA 5110 | ||| | ||| |||| Sbjct 9416 ATGCCAGACATCGTGATA 9399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426726593161313