Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1181 223 5e-53 seq2578 104 3e-17 >seq1181 Length=30581 Score = 223 bits (246), Expect = 5e-53 Identities = 590/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Minus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||||||||| || || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 47912 CATAAAATCAAATGGATTAACTGCATTATA--------------------------AAtt 47945 |||||||||||| ||||| | | || ||| |||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 47946 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATC 47997 | ||| | | || | ||| | || || ||||| | ||||| || || Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 47998 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACT 48057 ||||| || ||||||||||| || | | ||||||||||| || | | ||||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 48058 CTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG----T 48113 | ||||| || || || || |||||| || || ||||| || | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 9985 Query 48114 GGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTA 48173 |||| | ||||||||| | || ||| || ||||||||||| || ||||| |||||| Sbjct 9984 TGATA----ATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTA 9929 Query 48174 CTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAAT 48233 || |||||||| || ||| | || || ||||| || || ||||| || ||||| ||| Sbjct 9928 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 9869 Query 48234 ATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC 48293 || || ||||| |||||||| || | ||||| || || ||||| || | | | Sbjct 9868 ATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGT 9809 Query 48294 TCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350 ||| | || | | || | | | ||||| | |||||| | |||||| || Sbjct 9808 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 9749 Query 48351 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAAC 48409 ||||||| | ||| | ||| || || |||||||||| |||| ||| ||||| | Sbjct 9748 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 ||| ||||| ||||| | | |||||||| ||||||||||| || || || ||||| | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 || ||||| || | | |||| |||||| || ||| | || ||||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 ||| ||| ||||| ||||| || ||||| || ||||| || | || |||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 9509 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGG 48709 |||||||| || || | || || ||||| | || ||| | ||| |||| || || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 48710 GAAAA 48714 ||||| Sbjct 9389 GAAAA 9385 >seq2578 Length=22660 Score = 104 bits (114), Expect = 3e-17 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Minus Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 || ||| || ||| |||||||||||||| || || | ||| ||| || ||| Sbjct 11343 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTA-- 11286 Query 78272 AATGGA----TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATG 78327 |||| ||| || || || || || | |||||||| | || || ||||| | Sbjct 11285 --TGGACATTTATTCCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCG 11228 Query 78328 TATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTT 78387 ||||||| || || |||||||| || || |||| | | ||||||||| || || | | Sbjct 11227 TATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCT 11168 Query 78388 GATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAG 78447 | | | |||||| || ||||| | |||||| || ||||| |||||||||||||||| Sbjct 11167 GTGGTTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAG 11108 Query 78448 A 78448 | Sbjct 11107 A 11107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694129901995040