Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1181 192 8e-44 seq2578 89.7 7e-13 >seq1181 Length=30581 Score = 192 bits (212), Expect = 8e-44 Identities = 584/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Minus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 46401 CATAAAATCAAACGGATT----------------------------------AGTAACAT 46426 |||||||||||| ||||| || || | Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 46427 TATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 || ||| |||| | | || | ||| | || || ||||| | ||||| || ||| Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 ||||| || ||||||||||| || | |||| |||||||| || | | ||||| Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 | ||||| || || || || |||||| || || ||||| || | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 9985 Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666 || | ||||||||| | || ||| || ||||||||||| || ||||| |||||||| | Sbjct 9984 TGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 9925 Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 ||||||| || ||| | || |||||||| || || || || || ||||| ||||||| Sbjct 9924 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 9865 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | ||||| |||||||| || | ||||| || || || || || | | | ||| Sbjct 9864 CTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTG 9805 Query 46787 CGTAACTGGCATCATTATGAA--TCCA--CC--TTTGA-GCCCAATCAGCCTTTTTCTTT 46839 | || | | ||| ||| |||| || | | | ||||| | ||||||||| Sbjct 9804 CAAAAGTAG----ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 9749 Query 46840 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAAC 46898 ||||||| | ||| | ||| || || |||||||||| |||| | ||||| | Sbjct 9748 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 |||||||| ||||| | | |||||||| || ||||| || || ||||| ||||| | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATT 47018 || ||||| || | | || | ||||| || || | || ||||| | || Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||| || ||||| ||||| || ||||| || || || || | || |||| Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 9510 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138 ||| | | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 9509 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 9450 Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 ||||| || || || | || || ||||| | || ||| | ||| |||||| || || Sbjct 9449 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGG 9390 Query 47199 AAAAA 47203 |||| Sbjct 9389 GAAAA 9385 >seq2578 Length=22660 Score = 89.7 bits (98), Expect = 7e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 76877 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCC 76936 || || || || || ||||||| || | ||||| ||||| || || || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 76937 TCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 ||||||||||| || |||| | | ||||||||| || || | || | | |||| Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTT 11154 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 || || ||||| | ||| || || ||||| || |||||||||||||| Sbjct 11153 CCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 11107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712381332227520