Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1181 228 8e-55 >seq1181 Length=30581 Score = 228 bits (252), Expect = 8e-55 Identities = 604/917 (66%), Gaps = 54/917 (6%) Strand=Plus/Minus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||||||||| ||||| || | || ||||| |||||||| || || | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 23280 CATAAAATCAAATGGATTAGAAGTATTATATAC----------------------AGCTT 23317 |||||||||||| ||||| || || ||| || | || Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 23318 TACA-------TGATAA-----TTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATT 23365 |||| | |||| ||| || ||||| ||||| | ||||||||| || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 23366 GACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATA 23425 ||||||||| | | || || || |||| | ||||| | || || |||| || Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 23426 GTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGAT 23485 | ||| || ||| || ||| | |||||| ||| | ||| | | | || | Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCT---TGGAAGGCT 9988 Query 23486 ATTTTA-AATAC--TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTAC 23542 ||| | |||| ||||| |||| ||| || |||||||||||||| ||||| || |||| Sbjct 9987 TTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 23543 TAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATA 23602 | || |||||||| ||| | | ||| ||||| | |||||||| |||| ||| |||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 23603 TTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTG 23662 | || || || || ||||| || | ||| || || || ||||| || | | |||| Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 23663 TACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA 23722 |||| || | || |||| |||||| | | || ||| | |||||| |||| Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTT---TTTTG 9751 Query 23723 CACACTCAATT---GTTTC-AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTT 23778 || || ||| | ||| | || || || |||||||| |||||| ||| | Sbjct 9750 CA-ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG 9692 Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||||| |||| ||||||||||| |||||||| || ||||| ||||| Sbjct 9691 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 9632 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCAT-TAAAAAATCTTTTAGCTAA 23897 | ||||||||| || | | | || | | || || || | ||| || ||| | Sbjct 9631 ATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAG-GAG 9573 Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 || ||| ||||| || ||||| || ||||||||||| | || || ||| ||||| Sbjct 9572 GTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATG 9513 Query 23958 TCTTTCATCA--GTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 24015 | ||| || ||| | | ||||| | | |||||| || ||||| || || Sbjct 9512 ACGTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 9455 Query 24016 TCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGT 24075 || || ||||||||| || | || |||||| | |||| | ||| | || || | Sbjct 9454 TCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCT 9395 Query 24076 ATTGGAAATATTACGAA 24092 || || || | ||||| Sbjct 9394 ATGGGGAAAAGGACGAA 9378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521083449165400