Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5459 89.7 1e-12 seq10576 84.2 5e-11 >seq5459 Length=18096 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 61173 GGTGTTGCAAAACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATG 61232 || ||||| ||||| ||||| || |||||| |||||| || ||||| ||||||||| Sbjct 10369 GGCGTTGCGAAACTGTACGCATATTGGATTGTGGTAAATTATCGAGAGTCTTATGGAATG 10310 Query 61233 TTTGTATGTAACTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTTGTG 61292 |||| ||| ||| ||||| |||||||| || || || |||| | |||||| Sbjct 10309 TTTGCATGCAACGGGATTTTATTCAATCATGAAAGCCCTCGGCGAGGAGAAACGTTTGTT 10250 Query 61293 ACTCGTAAAATTAC 61306 ||||| |||||||| Sbjct 10249 ACTCGGAAAATTAC 10236 >seq10576 Length=10243 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| |||| || ||||||||||||||||| Sbjct 9616 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAAACTCATGGTCGTGGGTTCGAGC 9675 Query 165770 CCCACG 165775 |||||| Sbjct 9676 CCCACG 9681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057253823277470