Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12381 212 6e-50 >seq12381 Length=8583 Score = 212 bits (234), Expect = 6e-50 Identities = 522/777 (67%), Gaps = 26/777 (3%) Strand=Plus/Plus Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834 || || ||||| | | || || || || | |||||| ||||| || ||||| | || | Sbjct 6089 TAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATATACTGACACATCAGTTTG 6148 Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 || ||||| || || | | || || || ||||| | ||||| || ||||| | | Sbjct 6149 CAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA 6208 Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 ||||| || |||| || | ||| |||| ||||| | || || | | ||| ||||| Sbjct 6209 ACCGCCTCTCTTATTATTGACT--CAACACGTTCTTTGGGAGGCTTTTTGATAATATGTT 6266 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||||| ||||| |||||||| ||||||| ||| |||||||| ||||| | ||| || Sbjct 6267 TAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGC 6326 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 ||| | || || ||||| ||||||||||| | ||| ||||| || || || | Sbjct 6327 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTAC 6386 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 ||||||| || | ||| || || | |||||| || | ||| ||||| || | || | | Sbjct 6387 CAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATT 6446 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCA----TC 17188 | || |||||| | |||||| || || |||| |||| || Sbjct 6447 TAGAATCACCAATCCAATCTAATGCCCACTGAGCCTT----TTTA-GCAACACAAGTTAA 6501 Query 17189 GTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATC 17244 ||| | |||||| || | | || || |||| || ||| ||| | || || ||||| Sbjct 6502 GTTGCTTATGGCGTTGAAGAGAAAGTCCCTTT---CTTTAGAGTCTTTGATGTATGTATC 6558 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || | || ||||||||| ||||| || ||||| || |||||||| | ||| || || Sbjct 6559 AATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATTCCATAGAA 6618 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 || || | || | || || ||||| ||| |||||| || || ||| || Sbjct 6619 ACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGAC 6678 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAAT-ATTTTTCGTC 17421 |||||||| || || || || || || || | || | | ||||||| | || | Sbjct 6679 AATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 6736 Query 17422 CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 | ||| || | ||| | | | ||||||||||| |||||| ||||| ||||| Sbjct 6737 ACTTTTAAAGACTC-CCAATGTATGAGATCTTTGGATAAATCCACCTCTTCCACAGTCCA 6795 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| || || ||||| ||||| | || ||| | ||| | ||||| ||||||||| Sbjct 6796 AAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAA 6852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517273442176920