Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq12381 269 3e-67 >seq12381 Length=8583 Score = 269 bits (298), Expect = 3e-67 Identities = 512/751 (68%), Gaps = 2/751 (0%) Strand=Plus/Plus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || || || | |||||| ||||| |||||||| | | |||||| || || || | | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || || |||| | |||||| | |||||||||| |||||| ||| | || || Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGAC 6229 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | ||| || | || | | | | | |||||||||| |||||| ||||| || Sbjct 6230 TCAACACGTTCTTTGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCA 6289 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||||||||||||||||| ||||| | ||| ||| ||||| | || ||||| Sbjct 6290 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 6349 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | ||||||||| || ||||| || ||||| || | ||| || || Sbjct 6350 CCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACT 6409 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| | ||| ||||| || | |||| | || || |||||| | | Sbjct 6410 GCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAAT 6469 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTTAAACAATTTCTC 16452 |||| | || |||| | |||| | ||| || ||||| || || | || Sbjct 6470 GCCCACTGAGCCTTTTTAGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAGAGAAAGTC 6528 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 |||| | | || | || || |||||||| | |||| ||||||||| ||||| || Sbjct 6529 CCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAAT 6588 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC 16572 ||||| || |||||||| | ||||||||| || ||| |||| | || || ||||| Sbjct 6589 ATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTG 6648 Query 16573 GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAA 16632 || |||||| |||||||| || || ||||||||||| ||||| || || || Sbjct 6649 ACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCTAA 6708 Query 16633 TATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTT 16692 | || ||||||| ||| || | | | | | ||||| | | | |||||| Sbjct 6709 CACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAGATCTTT 6768 Query 16693 GGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCA 16752 ||||| |||||| ||||| |||||||| || || ||||| ||||| | | ||| Sbjct 6769 GGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCA 6828 Query 16753 AATATCATTGTATTGTATGGGAAATACGACG 16783 | ||| | ||||| |||||| || | |||| Sbjct 6829 GACATCGTGGTATTCTATGGGGAAAAGGACG 6859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511145466345080