Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq12381 250 3e-61 seq13135 114 2e-20 >seq12381 Length=8583 Score = 250 bits (276), Expect = 3e-61 Identities = 514/752 (68%), Gaps = 17/752 (2%) Strand=Plus/Plus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || || |||| ||| || ||||| ||||| || |||||||| || || | | Sbjct 6110 CTGTCAGCGATAAATTCAATATACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTG 6169 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085 ||||| || || | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 6170 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGA 6228 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACA--ATAA-ATGTTTAAACATCAAACATGCGAA 24142 || ||||| | || || | |||| ||||||||||| | ||| ||||| Sbjct 6229 CTCAACACGTTCTT---TGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAA 6285 Query 24143 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 24202 ||| || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 6286 ATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCAT 6345 Query 24203 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 24262 || || || || |||||||| ||||| | ||||| |||||||| || | ||||| Sbjct 6346 AAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTC 6405 Query 24263 TACTGCCGCAAAGGCAA-TAAGTCTTTCTCCATAACCGGCGCT---GTCATGTATCCACT 24318 ||||| ||||| |||| |||| | |||| || || | | ||| ||||| | Sbjct 6406 CACTGCTGCAAAAGCAACTAAG-CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAAT 6464 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAG 24376 | ||||| | ||||| || ||||||| | ||| || ||| || || ||||| Sbjct 6465 CTAATGCCCACTGAGCCTTTTTAGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAG 6522 Query 24377 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 24436 | ||| |||| ||| ||||| | ||||||||||| || | | |||||||| || Sbjct 6523 AAAGTCCCTTTCTTTAGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 6582 Query 24437 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 24496 ||||| || || || || || || | ||| |||||||| | | |||| | |||||| || Sbjct 6583 GTGAATATTCTCGATAGCTATCTGCATTCCATAGAAACAACGAACCTCTGGAATCTGGAC 6642 Query 24497 TTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 24556 |||| || || ||||| | || || || || |||||||| || ||||| || Sbjct 6643 TTCTTGACTGAAGCGTTCCAGGAGGTTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAA 6702 Query 24557 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGAT 24616 || || || | ||| |||| ||| | | ||| | ||||| ||| Sbjct 6703 GGCTAACACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAG 6762 Query 24617 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 24676 |||||| |||| |||||| |||||||| |||||||| || || | ||||| ||||| | Sbjct 6763 ATCTTTGGATAAATCCACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAA 6822 Query 24677 ATTCCAGATGTCATGATATTGAATTGGAAAAA 24708 || ||||| || || |||| || || |||| Sbjct 6823 ATGCCAGACATCGTGGTATTCTATGGGGAAAA 6854 >seq13135 Length=7929 Score = 114 bits (126), Expect = 2e-20 Identities = 183/263 (70%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 54297 ||||||||| || | ||||| || || | || ||| | |||| ||||| ||| Sbjct 6006 AATACCATTTGAATCTCCATTTGTTCCAGCTATGTAGGTCCCACGACTGCGAATGTTATG 5947 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 || ||| || || ||||| || ||||||| || | ||| ||| ||| | |||||| Sbjct 5946 AACATTTAGTCCAATACCCCCGGCATTTTTAGATATAACTGCACATTCTTTCAGCGTATC 5887 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 || ||||| ||||||||||| || |||| | | |||||||| || || | || | Sbjct 5886 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTGTGG 5827 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 | ||| || || ||||| | || || ||||| || |||||||| |||||||| | Sbjct 5826 TTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGACAT 5767 Query 54478 TAGATTGTACGTCTCGATAGCTG 54500 || || ||||||| || || || Sbjct 5766 TAAGTTATACGTCTAGAAAGTTG 5744 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 54713 GGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCA-CTTCACT 54771 |||||||||||| || |||||| | ||| | ||||||| |||| || | || Sbjct 4591 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATC-TTCAACAACATCTGA 4533 Query 54772 AAA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 ||| ||| ||| ||||| |||||||||||||| |||| | | ||| || | |||| Sbjct 4532 AAACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGTAAGACGAGCAGCCAAAATG 4475 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGTCAGAGTGTCCAA 54888 ||||| || |||||| |||| | || | | || | | ||||||| |||| | ||||| Sbjct 4474 GCATATTCATGATGTTTTGTAAT-CATGCTTGCGCATGTCTCGGCTGCCAGATTATCCAA 4416 Query 54889 TTCTACCGTTGTTACTCCA 54907 |||||| || || |||||| Sbjct 4415 TTCTACAGTAGTCACTCCA 4397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593409384075120