Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12381 140 3e-28 >seq12381 Length=8583 Score = 140 bits (154), Expect = 3e-28 Identities = 398/612 (65%), Gaps = 0/612 (0%) Strand=Plus/Minus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| ||||| ||||||||||| |||||| || | |||| | || || Sbjct 6873 AACCCACACCGCTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAG 6814 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | || || || ||||| || || |||||||| | ||||| || | | Sbjct 6813 AAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTCATACAT 6754 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||||| || || | || || |||||||| ||||| | ||||| || || Sbjct 6753 TGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCG 6694 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || || |||||||| ||| |||||| || | || || ||| ||| || || ||| | Sbjct 6693 GCAAGTGACGGCATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGAAGTCCAGATT 6634 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||| || || ||||| || | ||||| || || ||||| | ||||| |||||| Sbjct 6633 CCAGAGGTTCGTTGTTTCTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATG 6574 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || || | || || || ||| | || | || | | | | | || ||| Sbjct 6573 TACTCTTTATTAATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAAC 6514 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 ||||| | | | || || | ||||| ||||||| | ||||| | Sbjct 6513 GCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGT 6454 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | | | | || | || ||| | || || || || || || || || ||||| Sbjct 6453 GATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTT 6394 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 ||||| || || || || || ||||| ||||| |||||||| || || ||||| || ||| Sbjct 6393 TTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTG 6334 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 |||| ||||| || | ||| || ||||| || || ||||| || || || ||| | Sbjct 6333 TCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTA 6274 Query 117194 CTGTTCAAGCAT 117205 |||| || ||| Sbjct 6273 TTGTTTAAACAT 6262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514948265543440