Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq12381 251 7e-62 >seq12381 Length=8583 Score = 251 bits (278), Expect = 7e-62 Identities = 585/878 (67%), Gaps = 58/878 (7%) Strand=Plus/Plus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| |||||||| || || || ||||| | ||| || ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 16006 CATAAAATCAAAAGGATTTTTTGAAC-------------------------AATAGTA-- 16038 ||| || ||||||||||| | ||| ||||| | Sbjct 6013 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 6072 Query 16039 TTTA---------TCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 |||| || | || | ||| | || || || || || | |||||| ||||| Sbjct 6073 TTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATATA 6132 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||| ||| | | || ||||| || ||||| | || || | ||||| | |||||| Sbjct 6133 CTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 6192 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG 16209 | | |||||| |||||| || | ||||| | || | || | ||| ||||| Sbjct 6193 CTCCTGTTCTATCAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTCTTTG--GGAGG 6249 Query 16210 GTTTA--ATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 ||| |||| |||||||||| || |||||| ||||||||||| | ||||||||| || Sbjct 6250 CTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 6309 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 ||| ||||| || || ||| | || || ||||| || |||||||| |||| ||| || Sbjct 6310 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 6369 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 |||||| ||||| ||||||||| || | |||||| ||||| ||||| ||||| || || Sbjct 6370 TATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCG 6429 Query 16387 CTCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgtt 16445 || | | | | |||| | | | ||||| | | ||||| | || |||| Sbjct 6430 TTCTGCAAAAG-TAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAG 6488 Query 16446 tAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAA 16505 |||||| | | ||| ||| || || || | | | | ||||||| ||| | Sbjct 6489 CAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGA 6548 Query 16506 TATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAA 16565 | || ||||| |||| |||| |||||||| || ||||||||||| || |||||||| | Sbjct 6549 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 6608 Query 16566 AACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAAG 16624 ||||| || || | | | || | || || ||||| || | || | || | | | | Sbjct 6609 TTCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGACTGAAGCGTTCCAG-GAGG 6667 Query 16625 TTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttt 16684 || ||| || || || || || || ||||| || || | | || || ||| Sbjct 6668 TTCTCGAGGACAATGCCGTCACTTGCCGCAAAGAAGGCTAACACGTAGGATATGAAA--- 6724 Query 16685 ttttCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACC 16738 | ||| || || |||||| | || || | |||||| |||||||| ||| Sbjct 6725 -TGACGT--TCCCCAACTTTTAAAGACTCCCAATGTATGAGATCTTTGGATAAATCCACC 6781 Query 16739 TCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||||| |||||||||||||| || |||||||| ||||| Sbjct 6782 TCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 6819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462268782283400