Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12381 190 2e-43 >seq12381 Length=8583 Score = 190 bits (210), Expect = 2e-43 Identities = 460/690 (67%), Gaps = 56/690 (8%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || |||||||||||||| || ||||| | |||||| ||||| Sbjct 5953 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTCCCTTCGATTGATATGTTTTC 6012 Query 13975 CATAAAATCAAATGGATTTGT-----TGA--CAT---------AAACACTTTA------- 14011 ||| || ||||| ||||| || ||| ||| ||||| || | Sbjct 6013 CATGAAGTCAAAAGGATT-GTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAG 6071 Query 14012 --------------TCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATAT 14057 ||| |||| ||||| | |||| || || || || || ||||||| Sbjct 6072 ATTTACAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATAT 6131 Query 14058 ATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAA 14117 | ||| |||| | | |||||||| || |||| | || || | | || ||||| Sbjct 6132 ACTGACACATCAGTTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAA 6191 Query 14118 ATTCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGA 14176 | || | |||||| ||| || ||||| |||| || | || | ||| || | || Sbjct 6192 ACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTTTGG---GA 6247 Query 14177 GGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 14233 || | ||| | | |||||||| | || ||| || ||||||||||| || || || ||| Sbjct 6248 GGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCT 6307 Query 14234 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 14293 ||||| || | ||| || ||| | | ||| ||||| | |||||||| || | ||| Sbjct 6308 CTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAG 6367 Query 14294 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAAT 14353 ||||| || || || || ||||| || | || || ||||| ||||| || | ||| Sbjct 6368 AATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG 6427 Query 14354 CGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14413 |||||| |||| | | ||| | ||||| | | ||||| | || ||||| Sbjct 6428 CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTA 6487 Query 14414 ttAATAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTAC 14468 || | || | ||| || || || || || | || || |||| ||||| ||| Sbjct 6488 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTAGAGTCT 6544 Query 14469 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14528 ||| |||||||||||||| | ||| |||||||||||||| || || || ||||||| Sbjct 6545 TTG--ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTA 6602 Query 14529 TCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||| | ||||| ||||| | | | |||| Sbjct 6603 TCTGCATTCCATAGAAACAACGAACCTCTG 6632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482091952536920