Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20rodhaini_20[genbank_20GCA_5F000951475.1_202014-10-12] 42,069 sequences; 343,294,136 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12381 131 1e-25 >seq12381 Length=8583 Score = 131 bits (144), Expect = 1e-25 Identities = 497/772 (64%), Gaps = 10/772 (1%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 || ||| | || || || ||||| | || | ||| | | || || ||||| | ||| Sbjct 6861 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCC 6802 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 || |||||||| || ||||| || || | || || ||||| | ||||||| || | Sbjct 6801 TCTTTTTGGACTGTGGAAGAGGTGGATTTATCCAAAGATCTCATACATTGGGAGTCTTTA 6742 Query 57660 AAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 |||| || | |||| || ||||||| || || || || ||| || || Sbjct 6741 AAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCAAGTGACGGC 6682 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGA 57779 ||||| |||||| | | ||| | || |||||||| || | | |||| | Sbjct 6681 ATTGTCCTCGAGAACCTCCTGGAACGCTTCAGTCAAGAAGTCCAGATTCCAGAGGTTCGT 6622 Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 || || || ||| | || | || || || || | || || |||||||| || || | Sbjct 6621 TGTTTCTATGGAATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTA 6562 Query 57840 ATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTCAACGCGATC-GAA 57896 || ||||| ||| | || ||| | ||||| | | || |||||||| || | | Sbjct 6561 ATTGATACATACATCAAAGACTCTAA--AGAAAGGGACTTTCTCTTCAACGCCATAAGCA 6504 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 || | | | | || || ||||| ||||| || | | ||||| | | Sbjct 6503 ACTTAACTTGTGTT-GCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAA 6445 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 | || || || || | || | || || || || || |||||| | || ||||| || Sbjct 6444 TCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGT 6385 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 |||||||| || ||||| ||| | |||||||| || || ||||| || ||| | |||||| Sbjct 6384 AGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGC 6325 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 || || || || | ||||| || || ||| |||||| || || ||| ||| Sbjct 6324 AATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAA 6265 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTG-GACATTA-TCACCGAGGCGGTCG 58194 || ||| |||| || || | || || | ||| | || || | | |||||||| Sbjct 6264 CATATTATCAAAAAGCCTCCCAAAGAACG--TGTTGAGTCAATAATAAGAGAGGCGGTTC 6207 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 ||| ||| | |||||| | ||||||||||||| || | | | || ||||| Sbjct 6206 TGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAATTGCA 6147 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 | |||||| |||| ||||| ||| | || ||||| || || | ||||| Sbjct 6146 AACTGATGTGTCAGTATATTGAATTTATCGCTGACAGGCTACTGGTTGAACT 6095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445531988166480